LOCUS RID41896.1 896 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-1981
PROTEIN_ID RID41896.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J01822"
/db_xref="Phytozome:Brara.J01822"
intron_pos 138:2 (1/19)
intron_pos 185:0 (2/19)
intron_pos 296:2 (3/19)
intron_pos 324:0 (4/19)
intron_pos 411:1 (5/19)
intron_pos 431:0 (6/19)
intron_pos 461:0 (7/19)
intron_pos 491:2 (8/19)
intron_pos 524:2 (9/19)
intron_pos 550:2 (10/19)
intron_pos 579:0 (11/19)
intron_pos 598:2 (12/19)
intron_pos 622:0 (13/19)
intron_pos 652:2 (14/19)
intron_pos 673:2 (15/19)
intron_pos 696:0 (16/19)
intron_pos 771:0 (17/19)
intron_pos 810:0 (18/19)
intron_pos 861:0 (19/19)
BEGIN
1 MADGEIQILR GYELRLLRCT VSIPSSDSPP ETQLLDESQS ETHPHDALIK SLLSLIEAGD
61 YLGALASDAA RVILGDAELD LVDSVDSAER VYSEVLHKVE SFVVNDSSDE IDKARRAVVV
121 MCLAISSAFW FTRCNLTGPT DQSVKCSLPF KVSESKELVE WENWAKIQLM SAGSDLLGKF
181 SNLQHLVFAR MLLLKLKDLL FETTATQTFE LRSVSWWLVR VLLIHQRVLH ERSSSLFEML
241 QVYMAEALDH FGALEKVESY WSSTMLLQGE VSSITSTIHL EACVLQYIYG RIDPCRLHLE
301 SAKAASKLEF SVSGAFGFRT IHQVDPKAQM VLIANTSSSN GDVMLASSKA DVGPYEAWGV
361 EAPEVYMTPK LVNDESEAGK DSATLKPVEQ AMILAQCLLI ERGSRHNEMQ RWDMAPYIEA
421 IDSQKSSYFV LRRFCDLLRV RWESTRGRTK GRALEMMGKL VEAINTSDPG ASQRIPLCYA
481 VHLPTIPALR KEYGELLVSC GLVGEAITIF ESLELWDNLI NCYCLLGKKS AAVDLINAQL
541 SERPNDPRLW CSLGDVTIDD SCYEKALEVS NDKSVRAKRA LARSAYNRGD FEKSKMLWEA
601 AMALNSLYPD GWFALGAAAL KARDVQKALD SFTFAVQLDP DNGEAWNNIA CLHMIKKKSK
661 ESFIAFKEAL KFKRDSWQMW ENFSHVAMDV GNIDQAFEAI QKILSMSKNK RVDVVLLDRI
721 MTELENRNSA SSLSVETEAS ADESTESKPC AATPAETQRH LELIGKIIQQ IVRTESTSEI
781 WGLYARWSRI KGDLMVCSEA LLKQVRSYQG SELWKDKERF KKFARASLEL CRVYMEISVS
841 TGSKRELFSA EMHLKNTIKQ ATVSFPESEE LKELESCLEE VRNALKKSEE TTNTKT
//