LOCUS RID41799.1 1419 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-1881
PROTEIN_ID RID41799.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J01729"
/db_xref="Phytozome:Brara.J01729"
intron_pos 156:2 (1/3)
intron_pos 580:0 (2/3)
intron_pos 675:0 (3/3)
BEGIN
1 MAASSSLTWT HDVFPSFCGG DVRKTFLSHL LKELGSKGIK AFVDDGIDRG KPIGPELVKA
61 IRESKIATVL LSRNYASSRW CLDELVEIME WREKDQQKKV ITIFYGVDPS DVRKQTGDFG
121 KGFDRTCVGK EEKMKKEWRR ALVDVANIAG YDSSRWHSEA DLISKIALDL MDELGFTPSK
181 DFDDFVGMEA RIKEIMSLLS KHSDAKVKFI GIVGPTGIGK TSTARALYDR FSRDFEFSTF
241 IEDIRGSKEM PSLGGSHHKY QLDCQKELLS RLFNQKDSKV GHLGVAEQRL RGKKVLIVLD
301 EMDCLLKLEA MAKKADWFGP GSVIIITTED RNLLKAQGIK CIYDMKLPDA VEAFQIFCQY
361 AFRQKSIDYG PSIIRALHTR FFFDFQFRAF IEYVSGSNEM TSLGDSDNCK FQSVYQKTQY
421 VDFYEFAWGI TGLAGHLPLG LRVLGSSLRG KSRDEWISAV PRLKSSLDKG IESILIFGFN
481 GLSDDKDRAL FLYIACLFVG FTVDRVKRFL EDCDLDVDHG LHNLEQKSLI STENGYVRMH
541 TLLQQMGRDI VKKKTKEIGK RQFLMDTKDI SELLEDENTG TGEILGIKLV AWGEEDIQIS
601 KTAFKGMKNL QFLVLHSQNV RIPEEGLSCL PEKLRLIEWP CCPLTFLPSK FFGKFLVELI
661 MTYSKLEKLW DGIKPLQRLK RMVLRESWCL KEIPDLTNAT SLEELDLHEC KGLLELTSTI
721 GNATKLKRCI LSGCCLLKEL PSSMGSLINL EELNLSQSTG LKELTGCLNL EILSGCSSLK
781 RLDLRGTAIR EVPLSIKSYL AHINKLDMSG CRNLKEFPNV PDSIEVLLLC KTRIEEIPPW
841 IENLSHLRRL VMYGCEELKK ISPNISKLEN LEFLGLRKTG QSEHHDRGDD EFEDFPDLFE
901 AVIEWDPNRW PDWILASDLE VDYILSRCLP AKALSLCLRS YGLNTIPDCI TRLSGLIKLD
961 VKGFRVLEAL PPLPDSLLSL DAEDCVCLER IDSSFHNPNI CLNFAGCYGL SRNARRLIHT
1021 SDCKYALLPG EEVPEHFPHQ ADSGSLTINL TPRPLPSSLR FKACVLLSIC HEGFTTHKDG
1081 VSCNVIGKQN GLTIQYGSNE HHMPFRFEEV EDHLYIFEDS FNLNQDCPEA GEATLSELLF
1141 EFLVHGNIRK VKGCGVRLLF PDSIIDINAA NDDDDDDDDD DENKVEIDHD DGDEVESDDD
1201 EFMLVPGVEV PAHFTYRATS GFLKINQTPG PLPPSLRFKA CILLSRGNIN LVDDEDIVSW
1261 RLNYFFDDVD DHGEEKKYSM RVSCRFRGKQ NGITVQYGSK QRDMPYICGW EERLYTFEDS
1321 FCLDQDLPEA EEATFSELVF HFKVFYKKWK VKACGVQLLE DEEESGRDED EDDEAGDGDN
1381 NGIEEDIKDD VDKIQERDES RRDDDAETRS KKRMRFSLL
//