LOCUS RID41685.1 734 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-1768
PROTEIN_ID RID41685.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J01624"
/db_xref="Phytozome:Brara.J01624"
intron_pos 239:0 (1/15)
intron_pos 270:1 (2/15)
intron_pos 298:0 (3/15)
intron_pos 330:2 (4/15)
intron_pos 354:0 (5/15)
intron_pos 385:1 (6/15)
intron_pos 412:2 (7/15)
intron_pos 424:2 (8/15)
intron_pos 476:0 (9/15)
intron_pos 523:0 (10/15)
intron_pos 546:2 (11/15)
intron_pos 573:0 (12/15)
intron_pos 611:2 (13/15)
intron_pos 661:0 (14/15)
intron_pos 684:1 (15/15)
BEGIN
1 MHGHDEDVHL SSSSIRINPS PHDNSLLSNL QSCSKTLSSH LSNTRLSLTR MLDSLKNRHA
61 SPRLTQTRPV RRHNSPTQML NSVTQLMIGS KSPLLSLSLI QSTQSIWSDP GAERLSSPLL
121 CCASLSLNRP SESTQTVEGK DVIQQQQQVQ KGHSSASRNA EERVLISEVL VRTKDGEELE
181 RKDLEVEALA ALKACRANSA LTVREVQEDV HRIIESGYFC SCTPVAVDTR DGIRLMFQVE
241 PNQEFRGLVC ENANVLPSKF IQEAFQDGFG KVINIKRLEE AITSINGWYM ERGLFGIVSD
301 VDTLSGGIVR LQVAEAEVNN ISIRFLDRKT GEPTKGKTRV ETILRQLTTK KGQVYSMLQG
361 KRDVDTVLAM GIMEDVSIIP QPAGDSGKVD LIMNCVERPS GGFSAGGGIS SGITSGPLSG
421 LIGSFAYSHR NIFGRNQKLN VSLERGQIDS IFRINYTDPW IEGDDKRTSR SIMVQNSRTP
481 GNLVHGNQPD NGSLTIGRVT AGIEYSRPFR PKWSGTAGLI FQHAGARDEQ GNPIIKDFYS
541 SPLTASGKTH DETLLAKFES IYTGSGEHGS TMFAFNMEQG LPVLPEWLFF NRVNARTRKG
601 IHIGPASFLF SLSGGHVVGN FSPHEAFAIG GTNSVRGYEE GAVGSGRSYV VGSGEVSFPM
661 RGPVEGVLFT DYGTDLGSGN TVPGDPAGAR LKPGSGYGYG FGVRVDSPLG PLRLEYAFND
721 KHNGRFHFGV GQRT
//