LOCUS RID41509.1 809 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-1592
PROTEIN_ID RID41509.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J01467"
/db_xref="Phytozome:Brara.J01467"
intron_pos 19:0 (1/14)
intron_pos 93:2 (2/14)
intron_pos 161:0 (3/14)
intron_pos 198:0 (4/14)
intron_pos 240:2 (5/14)
intron_pos 299:0 (6/14)
intron_pos 423:0 (7/14)
intron_pos 465:2 (8/14)
intron_pos 491:1 (9/14)
intron_pos 545:0 (10/14)
intron_pos 615:0 (11/14)
intron_pos 649:1 (12/14)
intron_pos 677:0 (13/14)
intron_pos 786:0 (14/14)
BEGIN
1 MKVHETRSHA HMSGDEQKKG NLRKHKAEGK LPEAEQSPKK AKSEKDSVNG TGDEYKEFCK
61 AVEENLSVDQ IKEVLETNGQ DCSAPEETLL AQCQDLLFYG ALDKCPLCGG NLICDNEKKR
121 FVCGGEISEW CSCVFSTKSP PRKEEPIKLP DSVMNSAISD LLKKHQDPKT RPKRELSSDK
181 PFTGMMISLM GRLTRTHQYW KNKIEKHGGK VSNSVKGVTC LVVSPAERER GGSSKLVEAM
241 EQGLPVVSEA WLIDSIEKQE AQPLEAYDVV SDLSVEGKGI PWDKQDPSEE AIESLSAELK
301 MFGKRGVYKD TKLEESGGKI FEKDGLLYNC AFSLCDLGKG RNEYCIMQLV TVSESNLNMY
361 FKRGKVGDDP NAEERLEEWE DEGEAIKEFA RLFEEITGNE FEPWEREKKI QKKPHKFFPI
421 DMDDGLDVRS GALGLRQLGV ASAHCKLESF VANFLKVLCG QEIYKYALME LGLDPPDLPM
481 GMLTDIHLKR CEEVLLEFVE KLKTTKETGQ KAEAMWADFS SRWFSLMHST RPMRLHDFNE
541 LADHAASAFE TVRDINTASH LVGDMRGDTL DDPLSDRYNK LGCKISVVDK ESEDYKMIVK
601 YLETTYEPVK VSDVAYSATV VNVFAVESKA IPSLDEIKKL PNKVLLWCGS RSSNLLRHIY
661 KGFLPAVCSL PVPGYMFGRA IVCSDAAAEA ARYGFTAVDR PEGFLVLAVA SLGEEVKEFT
721 SPPEDTKTLE EKKVGVKGLG RKKTEESEHF MWRDDIKVPC GKLVPSEHKD SPLEYNEYAV
781 YDPKQTSIRF LVEVKYEEKG TEIVDVEPE
//