LOCUS RID41369.1 868 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-1452
PROTEIN_ID RID41369.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J01336"
/db_xref="Phytozome:Brara.J01336"
intron_pos 29:1 (1/12)
intron_pos 211:2 (2/12)
intron_pos 376:1 (3/12)
intron_pos 405:2 (4/12)
intron_pos 429:2 (5/12)
intron_pos 453:2 (6/12)
intron_pos 475:2 (7/12)
intron_pos 530:1 (8/12)
intron_pos 605:0 (9/12)
intron_pos 647:1 (10/12)
intron_pos 669:1 (11/12)
intron_pos 732:2 (12/12)
BEGIN
1 MEAACRVTVV VLGTLAVLIH LVQAQDQQGF ISLDCGLPPE ELSSPYDEPS TGLRFFSDAA
61 YIQSGQTGSI QPNRESQYLK PYRTLRYFPN GSRNCYNLNV EKGSKYLVRA FFVYENYDGL
121 NIKPKFDLYL GPNLWSTIDF QEPEEDVRRV EMLHIPTSNS LQICLVKNGT TTPLISTLEI
181 RPVKTTIYET VSGSLNLYLR TFFNKSDTYI RYPSDRYDRV WTSYSSYFRN EWIQIFTTLQ
241 VEVNNLENYY DPPNAALTSA ATPTNSNLPL MINWTSSNVD NQYYFYTHFA EIQELQTNDT
301 REFSIVWNGE VLRRQFIPPK FSAFTLYRSS PSTCEGGKCS LQLIRTNTST LPPLINALEV
361 YTVIHFPQSE TNENDGDPCV PQQLMWEGLN CRITDKSTPP RITYLNLSSS GLTGTIADYI
421 QNLTQLETLD LSNNNLTGEV PEFLGNMKSL VFINLSRNDL SGVIPQALQR KGLLDPQGNP
481 RLCLSDSCLP PKSKPFPVAI VASLASVAII LVVLVLAFVL KKKKRSILGA LQRPPSNPPV
541 SPIQMNKKRF TYSEVINMTN NFQRVVGEGG FGIVYHGTLN VYEQVAVKLL SQSSTQGYKQ
601 FKAEVDLLMR VHHTNLVNLV GYCNEGDHLA LIYEYVPNGD LRQHLSGKGG RSIINWGIRL
661 RIALEAALGL EYLHIGCIPA MVHRDVKTTN ILLDEQFKAR LADFGLSRSF PVGGESHVST
721 MIAGTPGYLD PQYYRTSRLT EKSDVYSFGI VLLEMITNQP VIDQSREKSH ITQWVEFELI
781 SGDIRTIMDP NLQGDYDSHS VWRVLELAMS CTNPSSTKRP SMSQVVVELN ECLASENSRR
841 NMRRGRMESH SPAKVSMLID TGMFPVAR
//