LOCUS RID41225.1 1171 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-1308
PROTEIN_ID RID41225.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J01202"
/db_xref="Phytozome:Brara.J01202"
intron_pos 240:0 (1/7)
intron_pos 316:2 (2/7)
intron_pos 359:0 (3/7)
intron_pos 382:0 (4/7)
intron_pos 429:0 (5/7)
intron_pos 463:0 (6/7)
intron_pos 994:0 (7/7)
BEGIN
1 MDEDDEFGDL YSDVFQPPAV LPPPPPPLRS IDLNLRSQDQ DEPEEPNPPP VSRVSDTTAA
61 PKLPPPALPH AANLDSGGGG DDKDMTFDIE EPDADSTPAI PGLALDRGVT TTIDEAGDGG
121 GYGGQGGDDW DSDSEDDLQI VLNDNNVMMG GDNRRSRMGD NEADDDDDDE EPLVIVTDTD
181 QNQPMEDQLW GEDGLQGVEG EGKEGGGEAL KGSGPGGAVG PPKAGYSSHG YHPFHSQFKY
241 VRPGAAPMPG GAASAPGTSS GQVRPPANLG PMAGRGRGDW RPMGMRNPSV AQKGYHQAWG
301 SNTAGRGLDF TLPSHKTIFE VDIETFEDKP WRYQGVDITD YFNFGLNEET WIDYCKQLDQ
361 RRIETTMQSR IRVYESGRTD QGYDPDLPPE LAAATGAQGV PVDSSNLVKV ETAQVDSAKV
421 PAHVRPALPP GRPIPVETGS GERQPSVDTR APRMRDLDAI IEIVCQDSHE DAPSGENDTE
481 PAVSSLPIEN VPVETGYVNS RRPDGESAER SPTQDEPRKR LLRKQDDEIS RSTGSGQSFR
541 SSSPVGDRGT MSSSVDREDM EGVAGKDAEM EEERKTSSAV QEDDGGESKT ERSSGNSKAR
601 SESHRDHQQL KDSAEQEVIQ NKHSTRPASS KKHHDNSAPY QSRKNQDRGK EMERTRAASK
661 GGREYSNPHT DVDYTIARGD DYDRRKGRDV DGGFWRRKED DPFSRRGGDE GFRKRDREED
721 LGSKQRGKMR ESDIRNKDDH VPSRKHLDDG GLRNSYELDD HIGKRRKDEE YLRRNRSEKN
781 EISHGQREST SRLKRERGDR LDHQKRDVQH KSRDDFDDHS SLRHRDDFYM QRDGNERLRE
841 REDMDKLKLT QEDGLSARGR ERQVPTTRGH RGSEDRSSMM KDDYKASEKE HLTKDSTRHS
901 KQTKRREYHG EESSHHRGHG DFSARTDETV NNEKMPRQEK TSAKSDNVIN SMDGQQLQDR
961 KHKDSRRKIK EQREGADSAR SKQGEENGSS EVTGSKGKNE ARNHRSEIPQ QTNATKRHKE
1021 DASSGDELQD SKRGRTKMER WASHKERDDV VTVKASSTSS KLQDKEKGTN GRVLEPVHDK
1081 NRDVTEEKSS HDLAETKDRS EKGPPGDRHL DTVEKLKKRS ERFKLPMPTE KDTTGVKKME
1141 SETLPSAKIE GPVDSEVKAE RPARKRRWTS S
//