LOCUS RID41176.1 964 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-1259
PROTEIN_ID RID41176.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J01154"
/db_xref="Phytozome:Brara.J01154"
intron_pos 19:2 (1/21)
intron_pos 53:0 (2/21)
intron_pos 76:0 (3/21)
intron_pos 155:0 (4/21)
intron_pos 214:1 (5/21)
intron_pos 258:2 (6/21)
intron_pos 313:0 (7/21)
intron_pos 362:1 (8/21)
intron_pos 398:0 (9/21)
intron_pos 450:0 (10/21)
intron_pos 473:0 (11/21)
intron_pos 496:0 (12/21)
intron_pos 541:0 (13/21)
intron_pos 584:0 (14/21)
intron_pos 633:1 (15/21)
intron_pos 637:0 (16/21)
intron_pos 684:0 (17/21)
intron_pos 726:0 (18/21)
intron_pos 748:0 (19/21)
intron_pos 864:1 (20/21)
intron_pos 928:0 (21/21)
BEGIN
1 MTFSMRDLDQ ALQGCGQKSG IEIWRIESFK PVAVPKESHG KFFTGDSYIV LKTTASRSGS
61 LHHDIHYWLG KDSSQDEAGS VAVMTVELDS ALGGRAVQYR EVQGQETEKF LSYFKPCIIP
121 QEGGVASGFN HVKPEEHQTR LYICKGKHVV RVKEVPFARS TLNHDDVFIL DTESKIFQFS
181 GSKSSIQERA KALEVVQYIK DTYHDGKCEI AAVEDGRMMA DAEAGEFWGL FGGFAPLPKK
241 PASNDDQTAE SDGIKLFSVE KGKTEPIEVE SLQKDLLDTN KCYILDCGLE LFVWKGRSTS
301 IDQRKSASQA AEEFFRSSER PKLNLVSVME GFETVMFRSK FDSWPATSTV AEPQQGRGKV
361 AALLQRQGVN VQGLVKTSSS SSKDEPKPYI DATGNLQVWR MNGEEKISLE AAEQSKFYSG
421 DCYIFQYSYP GEDREEHLVG TWLGKQSVEE DRETAISIAS KMVESMKFMP AQARIYEGKE
481 PIQFFVIMQS FITFKGGVSD AFKKYIADNE VPDITYDKGV ALFRVQGSGP ENMQAIQIEA
541 VSTGLNSSHC YILHGDSTVF TWCGNLTSSD DKELMERMLD LIKPNEHTKA QKEGSECEQF
601 WELLGGKSEY PSQKIKKDGE SDPHLFSCTI SNENLKVTEI FSFTQDDLMT EDIFILDCHT
661 EIFVWVGQQV DPKKKPQVLT IGEKFLKHDF LLENLASETP IYIVTEGNEP PFFTRFFTWD
721 SSKSAMHGNS FQKKLAVLTN KGKPLLDKPK RRVPAYSSRS SVPDKSQPRS RSMTSSPDRA
781 RVRGRSPAFN ALAANFEKLG TRNQSTPPPM VSPLVRKLYP KSHAPDLTKL APKSAAFAAR
841 TALFEKFRPT PQEAAPTTPS SSEATNEAEA PKPTSETTEE ESTNNIHEDS KEEAEAEEDS
901 SLPTFPYERL KTDSEDPVPD IDLARREAYM SAAEFNEKLE MTKKEFYKLP KWKQNKLKMA
961 VQLF
//