LOCUS RID41163.1 1241 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-1246
PROTEIN_ID RID41163.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J01141"
/db_xref="Phytozome:Brara.J01141"
intron_pos 113:0 (1/24)
intron_pos 143:2 (2/24)
intron_pos 172:1 (3/24)
intron_pos 218:0 (4/24)
intron_pos 243:0 (5/24)
intron_pos 273:2 (6/24)
intron_pos 297:2 (7/24)
intron_pos 324:1 (8/24)
intron_pos 384:1 (9/24)
intron_pos 436:1 (10/24)
intron_pos 461:2 (11/24)
intron_pos 503:1 (12/24)
intron_pos 534:2 (13/24)
intron_pos 562:2 (14/24)
intron_pos 594:2 (15/24)
intron_pos 611:0 (16/24)
intron_pos 640:1 (17/24)
intron_pos 708:1 (18/24)
intron_pos 750:1 (19/24)
intron_pos 783:2 (20/24)
intron_pos 819:0 (21/24)
intron_pos 862:2 (22/24)
intron_pos 916:2 (23/24)
intron_pos 969:2 (24/24)
BEGIN
1 MTEEIKLSVL VSLFNWIQKS KTSSQKRSKF RKFLDTYCKP SDYFSAVRLI IPSLDRERGS
61 YGLKESVLAT CLIDALGISR DAPDAVRLLN WRKGGTAKAG ANAGNFSLIA AEVLQRRQGM
121 ASGGLSVKEL NDLLDRLASS ENRGEKTCVL STLIQKTNAQ EMKWVIRIIL KDLKLGMSER
181 SIFQEFHPDA EDLFNVTCDL KLVCEKLRDR HQRHKRQDIE VGKAVRPQLA MRISDVNAAW
241 KKLHGKDVVA ECKFDGDRIQ IHKNGSEIHY FSRNFLDHSE YAHAMSDLIV QNIMADKCIL
301 DGEMLVWDTS LNRFAEFGSN QEIAKAAREG LDSHRQVRTY LKFHLSLFLC CNFLRILINS
361 NILSNNAVML YPYKEKLIMR SLHNVAFDVL YVGDTSVIHQ SLKERHELLR KVVKPLKGRL
421 EVLVPEGGLN VHRPSGEPSW SIVVHSAADV ERFFKETVEN RDEGVVLKDL GSKWEPGDRS
481 GKWLKLKPEY VRAGSDLDVL IIGGYYGSGR HGGEVAQFLV GLADRADANV YPRRFMSFCR
541 VGTGLSDEEL NTVVSKLKPY FRKNEQPKKA PPSFYQVTNH SKERPDVWIE SPEKSIILSI
601 TSDIRTIRSE VFVAPYSLRF PRIDKVRYDK PWHECLDVQS FVELVNSSNG TTQKQKESES
661 TQDNPKVIKT SKRGGEKKNV SLVPSQFIQT DVSDIKGKTS IFSNMIFYFV NLPRSHSLDT
721 FHKMVVENGG KFSMNLNNSV THCIAAESSG IKYQAAKRQR DVIHFSWVLD CCSRNNLLPL
781 QPKYFLHLTD ASRTKLQDEI DEFSDSYFFD LDLEGLKQVL SNAKQSEDSK SIECYKKKLC
841 PEKRWSCFIG CCIYFHLYSE TLSIEEEALL GIMAKRLALE VLMGGGKVSN NLAHASHLVV
901 LALTEDSLDF TSVSKSFSEK EKRLLMKRRL HVVNSNWLED SLQREQKLSE EVYTLRPKSM
961 EESDTEESDK SEHDTTEVAS GGRAQTEEPA SSKLATTSSR GRSSTRAGNK RGRSSTNSVK
1021 RVQRRRGKQP SKIGGSETEE SDAASEEKAA TRLSDDIAED SDDAQRNSRR GRSAKRGKSR
1081 VAQPQRVQRP RRGKKPLKIG GDDSEENDDF DDKKNDSADE AKHRESLERD NTVSVEEASS
1141 QDSRNAKTEM DREEKIQIHE DPLQAMLMNM IPSLTLRNTS RTGEASTANV CGESESSEKR
1201 KLGAETDNAC VKNAEADEVP PPVKKKKVSY RDVAGELLKD W
//