LOCUS RID41072.1 969 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-1154
PROTEIN_ID RID41072.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J01059"
/db_xref="Phytozome:Brara.J01059"
intron_pos 42:2 (1/2)
intron_pos 385:0 (2/2)
BEGIN
1 MFLSTENPPH DHPLPSSPSF VHLTSTSSHE LAQSHPHSFS IRDYAYSNRK NNINNNWPFS
61 PKSLQLLSTH GVTDPLPPFQ ITVSSSSGKQ IVSHVQRGRD LAKLRLNQTI AKTRQGDCSQ
121 SKIVKNGLFR STSVSKSKEE IVLVAATSNN HHKSKTCGRG GGGMVKSKEA ISCVGIESVM
181 ASKTCPICKT FSSASNTTLN AHIDQCISID SSPVISKPNK PRVNQPLSVD SAVPLVTSKP
241 SKPRGKPLMK VKTMVDIYAT AKECTLEELD KRNGTNWAVI SSYTNRVVAD KSEVSKKRKV
301 APVGVGPVYV DAKGQKLRII TEFSEKKTSS TTRWREQQED GSNEKKSSSQ GSKENSKSSR
361 KRRQGKKHHK YLKLNNSHKT NESEVPECQR GVSGEGSSTG HRRIFNQRML AKRVSISKKL
421 NEKGHKVYAL RDQQSEDNDD DSWSGGDHVV LRGAALSALD KQKLRREVSG RNKTMFGSKR
481 AQRVRMSEKE ETSLAGAHLN TVRLKKSLSS IQEDKYPPGK NVREVTDASP RATSLRKLLP
541 PFVANGWRRL SLPVELKRAR LDLSDEEEEE TGRWESEMTQ ERELSDDDYV SGDNGERNEV
601 VHGSNPLTFS GYNEYEHEDD DDEESSEEEE GANALDKTDE FYQSETPPSN ETIPSERAYL
661 YNSEGVENMV YEEDDDVRFV SEVGKGSLYV EVDTIPIPGP PGSFIPSPRG MSYDEHLGNS
721 SVITSQLQSS MDQLDRHSSE SPVSAFSNFA AARLSFPAEL FSMDVPSSYS TTPVSFSVPS
781 HPEKMTVDKA ITPPSFRNND GEPCCCQRKE RISEGVTLNH QPSHLLQRRD AASSSSMAMN
841 LTKPLTCLDP NHPFEQSPPY MIQQEFDLHS KFSNKANVNG AAVVPPSPSN SVLRLMGKDL
901 MVMNQGEASL ASLKPTLQFL DPPPLSAGAG LYLNTGLYLR NSLEPTHQTQ TQASAFRNSF
961 DHVRYFSQS
//