LOCUS RID40900.1 1205 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-983
PROTEIN_ID RID40900.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J00908"
/db_xref="Phytozome:Brara.J00908"
intron_pos 152:0 (1/20)
intron_pos 186:0 (2/20)
intron_pos 234:0 (3/20)
intron_pos 284:1 (4/20)
intron_pos 293:2 (5/20)
intron_pos 350:0 (6/20)
intron_pos 371:1 (7/20)
intron_pos 404:1 (8/20)
intron_pos 439:0 (9/20)
intron_pos 485:1 (10/20)
intron_pos 525:0 (11/20)
intron_pos 576:0 (12/20)
intron_pos 606:0 (13/20)
intron_pos 632:0 (14/20)
intron_pos 685:0 (15/20)
intron_pos 747:0 (16/20)
intron_pos 861:0 (17/20)
intron_pos 942:1 (18/20)
intron_pos 981:0 (19/20)
intron_pos 1052:0 (20/20)
BEGIN
1 MMLSASLAKS SLEEMLESLR QKDECQQQPR DIPPALPSRP TSRARLPSAR RSLPANFSVS
61 SVIEDQNQNG SVASSRQPEA EGKRRKEKDL RVKRKSFGSK KMRRTGPSSE SPYAAEKEED
121 EEEVVKVTAK VSPVEEQKPE WNDNVDYFIK KKLRVWCRVA NGQWQLGKIQ STAADTSLVM
181 LSTANVVEVS TEDLFPANPD ILEGVENLIQ LSYLNEPSVL FNLRVRYSQD VIYSKAGPVL
241 IAVNPFKNVD IYGDDFISAY QKKDVDAPHV YAVAGAAYDE MMREEKNQSI IISGESGAGK
301 TETAKFAMQY LAALGGGSCG VEYEILKTTC ILEAFGNSKT SRNANSSRFG KLIEIHFSAM
361 GKICGAKLET LSFDQSRVVQ LCNGERSYHI FYEFCAGASP VLKERLKLKT ASEYTYLNQS
421 DCLTIDRVDD AQKFRKLLEA FDIVQIPKEH QERVFALLAA VLWLGNVSFR VTDNENHVEV
481 VADEAVTNAA MLMGCNSEEL MVVLSTRKLQ AGTDCISKKL TLRQATNMRD GIAKFIYASL
541 FDWLVEQINI ALEVGKSLTG RSISILDIYG FESFKNNSFE QFCINYANER LQQHFNRHLF
601 KLEQEEYEED GIDWTKVEFV DNQECLDLIE KKPIGLLTLL DEESNFPKAT DLTFANKLKQ
661 HLKTNSCFKG ERGRAFRVNH YAGEVLYDTN GFLEKNRDPL PADLINLLSS CDCQLLKLFS
721 TKMRGKSQKP LMLSDSTNQT VGTKFKGQLF KLMNKLENTT PHFIRCIKPN SKQLPRVYEE
781 DLVLQQLRCC GVLEVVRISR SGYPTRLTHQ EFAGRYGFLL SDKKVSQDPL SVSIAVLKQY
841 DVHPEMYQVG YTKLYLRTGQ IGVFEDRRKK VLQGIVGLQK HLRGRLSREY FQNMRNGALV
901 LQSYVRGENG RRMFDTKAKI HAVSVSEASA GELTAVINLQ SAVRGWLSRK RFNSMQRQKE
961 LVDVTTKSKR KGGRRVSEDK DLPVERFQVQ QSAMSDLQKR VLKSEEALVQ KEEENTALRD
1021 QLRQFEERWS EYEIKMKSME DTWQKQMSSL QMSLAAARKS LATENNTGQA GGRQDASMSP
1081 FGYDSEDTMS TGTPGVRTPT TKFSNGNTPE LRIRELNGSL NAVNHLAREF DQRRLNFDED
1141 ARAIVEVKGG PQATPNGQQH PEDEFKRLKL RFETWKKDYK ARLRETKARL HSDKGRHRKW
1201 WGKRG
//