LOCUS RID40779.1 821 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-863
PROTEIN_ID RID40779.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J00800"
/db_xref="Phytozome:Brara.J00800"
intron_pos 72:2 (1/12)
intron_pos 143:0 (2/12)
intron_pos 155:0 (3/12)
intron_pos 187:1 (4/12)
intron_pos 201:2 (5/12)
intron_pos 224:1 (6/12)
intron_pos 246:0 (7/12)
intron_pos 410:2 (8/12)
intron_pos 672:2 (9/12)
intron_pos 718:0 (10/12)
intron_pos 741:0 (11/12)
intron_pos 785:0 (12/12)
BEGIN
1 MEQKSVLLSA LGVGVGLGIG LASGQSLGRW ANGSGSVEDG LTGEQMEQEL VRQIVDGRES
61 TVTFDEFPYF LSERTRVLLT SAAYVHLKEL EISKHTRNLA PASKAILLSG PAEFYQQMLA
121 KALSHYCESK LLLLDITDFS IKIQSKYGCT KRKPLHKRSI SELTLDKMSS LMGSFSMLSQ
181 FEVEPRGALR RDTSGNVLKS SLDSSSLPPR HKRNAISTSN SVTASSKRST NLCFDEKLFL
241 QSLYKVVVFV SKTNPLIIYL RDVEKLLESE RFYKLFQILL NKISGPVLIL GSMVLEPEND
301 CQEVSEGVTA LFPYNIEIRP PEDESQLVSW KNRLEDDMKM IQFRDNKNHI AEVLAANDIQ
361 CDDLASICHA DTMCLSNHIE QIVVSAISYH LIHTKEPEYR NGKLVISSKS LSHGLSIFQE
421 GGSRSSEDSL KLDTNTDSKR KGGEVCSKSE SKPESYSPEN KNELEKSLPS NKNDNPLPPK
481 APEVVPDNEF EKRIRPEVIP ADEIGVTFAD IGSLDETKDS LQELVMLPLR RPDLFKGGLL
541 KPCRGILLFG PPGTGKTMLA KAIANEAGAS FINVSMSTIT SKWFGEDEKN VRALFTLAAK
601 VSPTIIFVDE VDSMLGQRTR VGEHEAMRKI KNEFMTHWDG IMTKPGERIL VLAATNRPFD
661 LDEAIIRRFE RRIMVGLPST ESREKILRTL LSKEKTDDLD FNELGQMTEG YSGSDLKNLC
721 ITAAYRPVRE LIQQERLKDQ EKKKREEAGK SAEESKEKED EACEEKEIIL RPLNMEDMRK
781 AKTQVAASFA SEGSGMNELK QWNDLYGEGG SRKKEPLTYF L
//