LOCUS RID40315.1 1398 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-398
PROTEIN_ID RID40315.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J00372"
/db_xref="Phytozome:Brara.J00372"
intron_pos 708:0 (1/2)
intron_pos 758:0 (2/2)
BEGIN
1 MVKSAPSLPD EVLGLDVVKS VPVLSDEIPD LDVIKSVPSC SSESSIQQKL CDEIMDVIRS
61 AESSSESSIK EKLSEEIMDV DVVKPVPKLS DGIMDVDVVK SVPSSSGSSN KGNESLDSDV
121 VKSVTSSSGS EENTCVKDKC SSEVRGVEAA KPVPAEIEII SDSESETKHS TKKKLSFAEC
181 SRVLDSTSES SEEEGASETN NNAKEDVTVE SLSSSSSSSS SSSSSASALS LSSSSSSSSE
241 DEVSSKEVVG ESDDDDCRKA SSPIRKVSEV RRKPLGRYKR AGPSSITPRK QFQKIRKLNH
301 PEEEEEDRLQ AKPKEFKMIQ KLNRPEEEEE DRFQAKPVKE FKRLQKVNRQ EEEEERFQAK
361 PVQEFKRLQK LNRQEEEDDR FQTKPRNEDK TIQKFNLQEE EEDRFQDKPR NEDRRIQKFH
421 CPEEEQQHIG VERVTKEHSN VVFTCVHCDK ENTGIFDSDS FCFRPHAITR GEEDADDLNK
481 HDYVPINTEK SPEKPSTSRP ETENPKEVIT PARPSTSRPE TVKAKEIQAP EMPPRQFSLK
541 TSMPVTPAEG LATPSLVNET VDNESASSII SGDESGYESE PSLKEKEAAK SNNNNSGWRM
601 LDGSRKEVDL FRLLVNSVRE NDRLGEEEED DILVSSPEEE QPEEQDERKY DDDGLLIIRP
661 PPLVEMFGMV EPAPPVVSEA QIEEDTMWEE VAFYTNANEV DLQLHSEIEK EISADDSPGA
721 ACRQGNHELC LDLEIGLKCI HCCFVLREIR GLDVSEWGER NTSGRRKIDR SEEEENSNFI
781 GNLEFEANSN NNLKEGSEST QGTVWDKIPG VKSQMYPHQQ EGFEFIWRNL AGTIMLNELQ
841 DFENSEETGG CIMSHAPGTG KTRLTIIFLQ SYLECFPNCK PVIIAPASLL LTWAEEFKKW
901 NISIPFHNLS SLEFTGRENS AASKLLMQKN SSARSNNEIR MVKIYSWIKS KSILGISYNL
961 YEKLAGVKDE DKKTKGKPDK ELEDIREILM DVPGLLVLDE AHTPRNQRSC IWKTLSKVET
1021 QKRILLSGTP FQNNFLELGN VLGLARPKYL ERLMSTLKKS GMTVTKRGKK ALGDKINNRG
1081 IEELKAVMLP FVHVHKGSIL QKSLPGLREC VVVLNPPNLQ RKVLESIEVT HNQKTKNVFE
1141 TEHKLSLVSV HPSLVSHCKL TGKESLTINE ALLAQLKKVR LDPNQSVKTR FLMEFIKLCV
1201 VIKEKVLVFS QYIDPLKLIM KHLVNWFKWT EGEEVLYMHG KLEQKQRQTL INEFNDPKSK
1261 ATVLLASTKA CSEGINLVGA SRVILLDVVW NPAVERQAIS RAYRIGQKRI VYTYHLVAKG
1321 TPEGTKYCKQ AQKDRISELV FACSSRPDKG KEKIAEAVTE DKVLDTMVKH LKLGDMFDNL
1381 IVQPKEADLV EGFSILMP
//