LOCUS RID40274.1 771 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-357
PROTEIN_ID RID40274.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J00334"
/db_xref="Phytozome:Brara.J00334"
intron_pos 39:1 (1/15)
intron_pos 58:1 (2/15)
intron_pos 320:0 (3/15)
intron_pos 361:0 (4/15)
intron_pos 385:2 (5/15)
intron_pos 407:0 (6/15)
intron_pos 452:0 (7/15)
intron_pos 480:2 (8/15)
intron_pos 504:0 (9/15)
intron_pos 540:0 (10/15)
intron_pos 619:1 (11/15)
intron_pos 639:0 (12/15)
intron_pos 690:0 (13/15)
intron_pos 719:2 (14/15)
intron_pos 746:2 (15/15)
BEGIN
1 SFPLLCATIL INPNSSIAFR QFLGAMKLRK KAIHPSNEVD NVGDDESSSD GVGSEFQAEE
61 EELQLLPLPN LVPAPAPVPL MRKGTKRKAS REKGKLLWEI WEKEDQKWVD EHKTEDGDLE
121 QLNNVITETT EPPPDLIMPL FRYQKEFLAW AIKQEQSAAA GGILADEMGM GKTIQAISLV
181 LARREAVGFT LVICPLVAVS QWLDEIARCT SPGSAKVLVY HGAKKVKNAE EFRKYDFVLT
241 TYSTVENGYR GCIVSPEKQC EFCSESFSPQ KLIIHNKYFC GPLAVKTTEQ TLEEDQIGSV
301 VKEKPILHSV RWNRIILDEA HNIKERSSST AKAVFALEAN YRWALSGTPL QNHVGEFYSL
361 IRFLQILPYS YYFCRDCDCS ILDYTKHTRC HSCPHQAARH FCWWGKNVTK VYGNQERGKR
421 AMIVFKKVLK DILIRRTKLE LAADLALPPR IITLRRDALD DEEFDYYESL YENSQAQFNT
481 YVQGGTWMKK DADIFVLLFR LRQAVDHQYL VEYSPSNLND ENKKEHECGL CHEPAEDNVV
541 TSCAHVFCKA CLIDFSASLR KVSCPTCSKL LTVDWTAKAG TEQQAESKTT LKGFRASSIM
601 NLIKLDDFQT STKIEALVSI VFSQFTSFLD LINYSLGKSG VSCAQLVGDM PRAAKDVAIN
661 KFREDPDCRV FLMSFKAGGV ALNLTVASHV FMMDPCWNPA VERQAQDRIH RIGQYKPIRV
721 VKFIIENTVE ERIIELQKKK ELLFEGTVDG SQEAMRKLTR DDMKFLFTIY N
//