LOCUS RID40224.1 943 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-307
PROTEIN_ID RID40224.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J00285"
/db_xref="Phytozome:Brara.J00285"
intron_pos 135:2 (1/22)
intron_pos 180:1 (2/22)
intron_pos 201:0 (3/22)
intron_pos 247:0 (4/22)
intron_pos 338:0 (5/22)
intron_pos 367:0 (6/22)
intron_pos 401:0 (7/22)
intron_pos 423:0 (8/22)
intron_pos 476:2 (9/22)
intron_pos 491:2 (10/22)
intron_pos 516:1 (11/22)
intron_pos 539:0 (12/22)
intron_pos 562:0 (13/22)
intron_pos 594:2 (14/22)
intron_pos 622:0 (15/22)
intron_pos 648:1 (16/22)
intron_pos 677:2 (17/22)
intron_pos 729:0 (18/22)
intron_pos 793:0 (19/22)
intron_pos 813:0 (20/22)
intron_pos 893:2 (21/22)
intron_pos 927:0 (22/22)
BEGIN
1 MEFDIPLPEE LELLEANSYY PEEEDDDYLN FEEPPYPYPI DGDEEKEEER EANLRRSESP
61 DINGCKRPRS IVSDPIVNLD EGSSPAAEKR SKIDDNNRVE MEDEEWLRPP PIKKVVHVME
121 EEEEVIIPQE TILSRYASEI DGECFPITAP DGGDRVYAKF NRALGDEEVK KLDVKAKSNG
181 LIKDPISVLL EQSEKEAFNK VLQASSEDQN ESITAETSVM HERLWVDKYS PSSFTELLSD
241 EQTNREVLLW LKQWDASVFG SEIRSTTDEV LSALKRHSTP SHRQKSDSAF TRKKQFSRWS
301 KDSSSFPKNS DASDSNATDN HDLRNKKSKL IGPPEQKILL LCGPPGLGKT TLAHVAAKHC
361 GYRVVEINAS DERSAAAIET RILDVVQMNS VTADSRPKCL VIDEIDGALG DGKGAVDVIL
421 KMVLAEKKHA TGKENIDNGK TSSKKERRTA PLSRPVICIC NDLYVPALRP LRQIAKVHVF
481 VQPTVSRVVN RLKYICNMEG MKTRSFGLSA LADYTECDIR SCLNTLQFLN KKNETLNVID
541 IGSQVVGRKD MSKSLFDIWK EIFNKRKMKR ERSNDASGSE AKKFDFLHSL VSSRGDYDLI
601 FDGIHENVLQ LQYHDPAMDK TVSCLDCLGT SDLLHRYIMR TQQMHLYAYL PSLVIPIHRR
661 VAQIQRPTIQ WPKSYHRCRT LLVEKQESLR SWHHKIPPYI GRHLSIKSFV EDSVSPLLHI
721 LSPPTLRPVA SHLLSEKQKD QLASLVMLMH SYSLTYKNVK LDPAMSNLRE GAASDASALA
781 LDPHLFDFIS FKGRQYKHHV LTLAMKQVLA HEVEKQKILQ ASGGRSGILS KPPEIKKINP
841 DLVRKTIAAS KESHKNPVIS KPPSVSVENA TTSKPKPSDV KKASRTALSF FDRFRKSRKD
901 YEDPEDVQKR ATAKRDSRPL LFKFNEGFTN AVKRPVRMRE FLL
//