LOCUS RID40091.1 2402 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-175
PROTEIN_ID RID40091.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J00159"
/db_xref="Phytozome:Brara.J00159"
intron_pos 34:1 (1/2)
intron_pos 2098:0 (2/2)
BEGIN
1 MAAFANANTK RYSWWWDSHI SPKNSKWLQE NLTDMDSKVK QMIKVIEEDA DSFARRAEMY
61 YKKRPELMKL VEEFYRAYRA LAERYDHATG VIRHAQQTMA EAFPNQDPMM FGEESLVGPS
121 TEEFDPQTPE SYPPIRAPVY PSDLKKGALG ISSSHMSTVK RNIAFMEDPQ GLKIGKARRG
181 LNFNDADGNG RNAKVLSESE RASKAEAEIV ALKDALAKVQ AEKEASLAQF DQNLERLSNM
241 ESEVSRAQED SRCLNERATR AEAEVETLRE TLSKLEVEKE SSLLQYQQCL ENIADLEERI
301 SLAQKEANER ASQAEGEIIA LKQSLVGSET EKEAALVQYQ QCLETISNLE ERLRKAEEDA
361 RLINQRAENA DGEVESLKEK VSKLTQENEA YELQYQQCLE TIADLKLKLF HAQEETQRLS
421 RELEDGVAKL KFAEEKCVVL ERSNQNLHSE LDGLLEKLGS QSHELTEKQK EMGKLWTTVQ
481 EEHLRFVEAE TAFQTLQQFH SQSQEELNTL ALELQNRSQF LKDLEARNSG LLEEVQEAKE
541 ENRSLNELNL ASAASIISLQ EEVSRLRETI QKLEAEVELR VDQRNALQQE IYCLKEELSQ
601 MGKKHQSMVE GFGSSIKELQ EENSKLKETK ERESIEKTSL LEKLELMKEL VEKNLLLEKS
661 ISDLNSELET IRGKLKTLEE AFAEEKSGLH SEKNMLVSRL QIATEDSKKL SEENRLLENS
721 LFDANAELEE LKSKLKSLED SCHLLNDDKS SLVNERESLL SRMDIMRKSI EDLEKEHAEL
781 NVKVLELATE RESCLQKIGE LGVSLDTKDR DYASFVQLSE SRMNGMKSKI HHLQDENKRK
841 EIVYQEELDR AHDAHVEIIV LQKCLQDWLE KSSSLVAENQ NLKQASHLLE KLVSELEQEN
901 IGKQVQIDSS VDCIKVLRTG IHQVLMKLEV IPGFDSGDEK SQDQKNIHEM LSRLDEMQAM
961 LLKIQRENHQ GTIENLVLVE FIRQLKSEAV GLATGKKVLE KENESQRSQL LLLQDEIQKL
1021 ICMNGELNTK VNQGVDREEV LKVEVEDVHR QSAIENLVLV EFLKQLKSEA VGIATEKKAL
1081 EEEIESKRSQ LLLSVDEAQK LSYMIRELTR KVNQGVSREE VLKVEVDDLH MQSATENLIF
1141 VEFLQQLKSE AVGIATEKNA LEEELESHRD QLSFSRNETK NLSHMNGELT TKVNQGINRE
1201 EVLKVEIEDL HMQSAIENLV LVEFLHQLKS EAVGITSEKK NVEEELESKS YQLSFLRDEA
1261 KNLNHVIREL TTQVNQGVDR EEVLKMENED LHTHSSIENL VLVEFLKQLK SEAVGIATEL
1321 ESQRHQLLFS QDATKKLSHM IEELTTKVNQ GVDREEVLKV EVDDLHRQSA IENLVLVEFL
1381 QNLKSEAAGI ATEKSALEEE LESHRDQLSF SRNETKELIY LNGELTTMVN QAVNREEVLK
1441 VEVDHLHMQS AIENLVLVGF LHQLKSEAVG IATKKKTIEE ELESQRSKLS FSQEETKNLL
1501 YMIGELTTKV DQGVSREKVL KVEVDHLHMQ STIENLVLVE FLQQLKSEAV GLATERNTLA
1561 EELESQRYQL SLSRDEAKKR IHMIGELTTK VNQGVNREEV LKVENEDLHM QSAIKNLVLV
1621 ESLCQLKSEA VGIATEKKIF EEELESQRSM LSLSRDETQK LIYMNGELTT KVKQGVNREE
1681 ALKVEIEDVH RQVLQLRNDF ATLQGENHKT LDEKKYLTKS TLRLEEEKRK LEEDISFLFS
1741 ETIYQSNLIL LLKDVVLEKL SEAVKLNEDL DRLEEEVREV GDKLKSRETD NLQLEGLLEK
1801 TDAELLSARS ANDQLEHEIA DVKDELVQKE KELQEAMLMI SIVESEKSEL SKAVEDLECR
1861 YKEAKAIEED KDKQVLKLQG DYEEQVKKTG HANEANMKLE ADLLNLLIEL EGIKAEKEKL
1921 NRELSKEKSE VEVWESQAST LFGDLQISAV HETFLNRLTY ELAEAYNNLE NRCTLKDVEI
1981 DQLNQKLSKE KNEVEQWESQ ASTLFGDLQI FAVHKTLLEG LVHELAEAYN NLESRCARKD
2041 VEIDQLKGRV NNLEDANKGQ EDLMSKYFQA IILLKESIES LEKHIDMPHE LEDEPPTDTA
2101 SMVDNKEGFL ELEEMCLRIK AIEEALTKKL AVEELKTSAR RSRRRSGSLR KQNHESEMIT
2161 KDIVLDQVSD CSSYGISKRG ILKIEDDHVF EVQTGKSLSE ESLVVDKLEI SDRFTDPNKE
2221 VNKRKVLERL HSDLQKLSNL HIAVEDLKSK VEREERSEKG KEDEYETVKG QIHEAEEALE
2281 KLLSVNRKLV TKVISGFEIS DGSKSSVDLD EDERSRRRRI SEQARRGSEK IGRLQFEIQR
2341 LQFLLLKLEG EREDRAKAKT SDSKTRTLLK DYIYGGVRGE RRKRIKKRFA FCGCVQQPPP
2401 SP
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