LOCUS RID40056.1 1178 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-139
PROTEIN_ID RID40056.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J00126"
/db_xref="Phytozome:Brara.J00126"
intron_pos 314:2 (1/2)
intron_pos 585:0 (2/2)
BEGIN
1 MVKPPAGSSS PVTITVTPCK GSGDRSLGLT SPVPRASVSN NQNSPLSSRG PRRSSLSGGN
61 RRSSGAGRYC SMSVEDLTAE TTNNSDCVVS YTVHIPPTPD HQTVFASQES NNAAEEEETN
121 SRNRSFLSGT IFTGGFKSVT RGHVIDCSME KADPEKKSGQ ICWLKGCDEK VVHGRCECGF
181 RICRDCYFDC ITSGGGKCPG CKEPYKDIND DDQDDDEEEE DEDEAKPLPQ MADSKLDKRL
241 SVVKSFKNQT GDFDHTRWLF ETKGTYGYGN AVWPKDGYGI GSGGYEQPPE FGERSKRPLT
301 RKVSVSAAII SPYRLLIVLR LVALGLFLTW RIRHPNREAM WLWGSSTVCE LWFAFSWLLD
361 QLPKLCPVNR LTDLDVLKER FESPNLRNPK GRSDLPGIDV FVSTADPEKE PPLVTANTIL
421 SILAVDYPVE KLACYLSDDG GALLTFEALA QTASFASTWV PFCRKHNIEP RNPEAYFGQK
481 RNFLKNKVRL DFVRERRRVK REYDEFKVRI NSLPEAIRRR SDAYNVHEEL RAKKKQMEMM
541 MGGNPEEAVK VAKATWMSDG SHWPGTWYSG ETDNSRGDHA GIIQAMLAPP NAEPVYGSEA
601 DSENLIDTTE VDIRLPMLVY VSREKRPGYD HNKKAGAMNA LVRTSAIMSN GPFILNLDCD
661 HYIYNSMALR EGMCFMLDRG GDRICYVQFP QRFEGIDPND RYANHNTVFF DVSMRALDGL
721 QGPMYVGTGC IFRRTALYGF SPPRATEHHG WLGRKKVKLS LRKPKASVKK DDEISLAMNG
781 EYNNGEENDD GDIESLLLPK RFGNSNSFVA SIPVAEYQGR LLQDLQGKGK NSRPAGSLAV
841 PREPLDAATV AEAISVISCF YEDKTEWGKR VGWIYGSVTE DVVTGYRMHN RGWRSIYCVT
901 KRDAFRGTAP INLTDRLHQV LRWATGSVEI FFSRNNAVFA TRRMKFLQRV AYFNVGMYPF
961 TSLFLIVYCI LPAVSLFSGQ FIVQSLDITF LIFLLSITLT LCMLSLLEIK WSGVTLHEWW
1021 RNEQFWVIGG TSAHPAAVLQ GLLKVIAGVD ISFTLTSKSS TPEDGDDEFA DLYLVKWSFL
1081 MVPPLTIMMV NMIAIAVGVA RTLYSPFPQW SKLVGGVFFS FWVLCHLYPF AKGLMGRRGR
1141 VPTIVFVWSG LLSIIVSMLW VYINPPAGRQ DFSQFQFP
//