LOCUS RID39939.1 1047 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-21
PROTEIN_ID RID39939.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J00019"
/db_xref="Phytozome:Brara.J00019"
intron_pos 482:2 (1/15)
intron_pos 540:0 (2/15)
intron_pos 570:1 (3/15)
intron_pos 616:0 (4/15)
intron_pos 646:0 (5/15)
intron_pos 681:0 (6/15)
intron_pos 724:0 (7/15)
intron_pos 794:0 (8/15)
intron_pos 844:0 (9/15)
intron_pos 862:0 (10/15)
intron_pos 881:2 (11/15)
intron_pos 904:0 (12/15)
intron_pos 963:0 (13/15)
intron_pos 982:0 (14/15)
intron_pos 1007:0 (15/15)
BEGIN
1 MESAFSIQRP SFCLSNRLIS SKLCPKGISN RFQFGNRSRR NVSPSATLTM TGRFYLHSTK
61 SILARIPFRF RTSCQGNDSL GNAETNDQSE EKDESESDSL EELRDLLHKA IKDLEVARLN
121 STMFEEKAQR ISETAIALKD EATSAWHEVN KTLDVMRVTV DEESLAKEAV QNATMALSLA
181 EARLRVVLES LEEAAGSNGV PESSQETEKS DSAEEKEEAL LAAKDDIREC QVNLADCEAQ
241 LTSLQNKKDE LQKEVDKLND FAETIQINAL KAEEDVANIM KLAEQAVAFE LEATQRVNDA
301 EIALQRAEKS LSIPPTPEET QGQLSDDETT LQEEVLLSSN TEDASHQVER ESLIHEDISA
361 VLNTADRVPD KVGQEAQKLT QPSDNENGKP SVDSSSKVVE SDSEKLKIAV QTKKQETQKD
421 LPKEGSSLIA PKASFNKSSR FFSASFFSSS SDGTTTVFAS LVNSAKQQWP KLVLGFALLG
481 AGLTLYSNGV GGNSQLLQQP DVVSTSTEDG SSNKETLIRQ VQKLPKRIKK LLEMIPHQEV
541 NEEEASLLDF LFLLLASVIF VPLFQKIPGG SPVLGYLAAG ILIGPYGISI IRNVHATKAI
601 AEFGVVFLLF NIGLEIGFQA IAEALGLAAV KAAVAITAII AGGRLLLRPI YKQIAENRNA
661 EIFSANTLLV ILGTSLLTAR AGLSMALGAF LAGLLLAETE FSLQVESDIA PYRGLLLGLF
721 FMTVGMSIDP KLLLSNFPVV IGTLGLLIVG KTLLVVIMGK LFGISIISAI RAGLLLAPGG
781 EFAFVAFGEA VNQGIMSPQL SSLLFLVVGI SMAITPWLAA GGQLIASRFE LHDVRSLLPV
841 ESETDDLQDH IIICGFGRVG QIIAQLLSER LIPFVALDVS SDRVTVGRSM DLPVYFGDAG
901 SREVLHKIGA ERACAAVVAL DAPGANYRCV WALSKYYPNV KTFVRAHDVV HGLNLEKAGA
961 TAVVPETLEP SLQLAAAVLA QAKLPTSEIA NTINEFRTRH LSELTELCET SGSSLGYGFS
1021 RTTSKTKPQA SDASDDNQIM EGGTLAI
//