LOCUS RID39925.1 2378 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-8
PROTEIN_ID RID39925.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J00008"
/db_xref="Phytozome:Brara.J00008"
intron_pos 34:0 (1/48)
intron_pos 128:1 (2/48)
intron_pos 204:2 (3/48)
intron_pos 313:0 (4/48)
intron_pos 351:0 (5/48)
intron_pos 394:0 (6/48)
intron_pos 459:0 (7/48)
intron_pos 524:0 (8/48)
intron_pos 570:0 (9/48)
intron_pos 611:0 (10/48)
intron_pos 695:2 (11/48)
intron_pos 730:1 (12/48)
intron_pos 762:0 (13/48)
intron_pos 836:0 (14/48)
intron_pos 896:0 (15/48)
intron_pos 920:1 (16/48)
intron_pos 943:0 (17/48)
intron_pos 991:2 (18/48)
intron_pos 1028:0 (19/48)
intron_pos 1077:0 (20/48)
intron_pos 1093:0 (21/48)
intron_pos 1136:0 (22/48)
intron_pos 1217:0 (23/48)
intron_pos 1263:0 (24/48)
intron_pos 1291:2 (25/48)
intron_pos 1327:0 (26/48)
intron_pos 1359:0 (27/48)
intron_pos 1410:0 (28/48)
intron_pos 1471:0 (29/48)
intron_pos 1547:2 (30/48)
intron_pos 1582:0 (31/48)
intron_pos 1625:0 (32/48)
intron_pos 1640:0 (33/48)
intron_pos 1705:0 (34/48)
intron_pos 1747:1 (35/48)
intron_pos 1781:0 (36/48)
intron_pos 1827:0 (37/48)
intron_pos 1855:0 (38/48)
intron_pos 1904:0 (39/48)
intron_pos 1948:0 (40/48)
intron_pos 1964:0 (41/48)
intron_pos 2013:0 (42/48)
intron_pos 2033:2 (43/48)
intron_pos 2085:0 (44/48)
intron_pos 2149:0 (45/48)
intron_pos 2184:0 (46/48)
intron_pos 2229:0 (47/48)
intron_pos 2296:0 (48/48)
BEGIN
1 MVMNPSKVAG HARFLLESFS DSEVDSIAQE ICQLVEYGVE TSIPVLKTCL DCFAARRSHP
61 NTSQLEKLIS LVFKRVLKHS NLISHALQDV EVTDEFVADL TNALDFSISD KISFALSLAE
121 SDDANAAGRN LLLAMIEQLC ANSAQIESTE QVQNILLFLQ TSEDLSTHLT SFLQILSSTQ
181 PKDDFSFALT PILSQQLHQA DVLRSIDFHT EFDSILAEID KEISVGDLMG ELGCGVTADA
241 QQCRDILSSF APLTEATISR ILANVARTCA DLEDNHTTFS TFSLVLGCCI PTELSTPMSW
301 SVDILIETIK QLAPGTSWRK VIENLDHSGF DIPNKESFSF FMRLYKTASQ DPFPLDAVCG
361 SVWKNVEGQI SFLKYAIASP PEVFTFMHSP RKLVYIDDNM HSHEHQLGLS NEAWLSLDLL
421 DVLCQLAERG HTVLVSSLLQ YPLAQCPKTL LTGMTHIKTA YNLIQREVVS AILPVIITNS
481 QDSGFILNLW HQNTELVLWG ILKAQNLKAD RILNLIDICH ELKVLSVVLE SVPISFSIRL
541 AVLASLRGYL DIENWLPNVL CVYKDLFAEE CLKFVKNVHF SESEDFTSQH FHPSDPLSDV
601 HLDATTSLLK VLKAHDNVIT SSQLVDEIEK VNAAILDCNS KLQNGEAKVS SASNAYGDDI
661 EAEANAYFHQ MFSGQLSVDA MVQMLSRYKD SSVQREKSIF DCMIANLFEE YRFFPKYPER
721 QLKIASILFG SVIKHQLISS LTLGMALRLV LDSLRKPADS KMFLFGSKAL EQFVNRLVEL
781 PQYCNHILQI SHLRSTHPEL VTVIEQALSR ISSGNLESEA VSNPGPSQSF PGNGEFSGSG
841 IGQSALQLPL PVQSQQKNEV HINDNSTVPS VPSIEAKTLL PSSSTTSADV SVIPKNPGIS
901 TSSLTSAGIV RPARGATSTR FGSALNIETL VAAAERRENA IEIPPSDVQD KISFIINNIS
961 TANIESKGKE FAEILPQQYY PWFAQYMVMK RASIEPNFHD LYLKFLDKVD SKLLFKEILQ
1021 NTYENCKVLL GSELIKSSSE ERSLLKNLGS WLGKLTIGRN YVLRAREIDP KSLIVEAYEK
1081 GLMIAVIPFT SKVLEPCQMS IAYQPPNPWT MAILGLLAEI YSMPNLKMNL KFDIEVLFKN
1141 LGVDLKEVAP TSLLKDRKRE IDGNPDFSNK DLGVTHISQP QIIQEPKTIS PLKQIDLPLD
1201 VADSPNTDDS SKLLSQYVAP QRVYTNTLME DEKVSHLGLS DQLPSPQGLF PSTPSPLFSI
1261 SQLSAALPNI GNHVVINQKL SGFALHFPFH RVVPLAMDRA IKEIVSGIVQ RSVCIACQTT
1321 KELVLKDYTL EPDETRIYNA AHLMVASLAG SLAHVTCKEP LRTSISGHLR NSLQGMNIKN
1381 EALEQIVQLV TNDNLDLGCA AIEQAATEKA IQTIDADIDQ QLSLRKKHRD GAGSSLFDPN
1441 MLSQNSVSFI PESLRPKPGH LSLSQQRVYE DFVQLPWQKQ TTQTSHGLSA ASSSSGDVGL
1501 SSSYGPASGK SASDFLSSAR NARMDNVSQP LDISVEGFES PPVSLLSSQV DPAVDTAGLQ
1561 FSKSLSTSEL SLVESSDTAM KETGASLQTL TSAATMERLG GNNIIQPSLS TRDALEKYHI
1621 VTQKMEDLVA NIAGDDEIQA VVSEVPEIIL RCISRDEAAL AVAQKAFKAL YDNASSNLHV
1681 SANLAILVAV RDVCKRVVKE LTSWVIYSEE ERKLNKDITI GLIQRELLNL AEYNVHMAKY
1741 LDGGRNKSAT DFSISLLQSL VTEESSVISE LHSLVDALAK LSSKYGSPES LQQLIDIIRN
1801 PVTNTSDHSN SAIGIENNDK QSKDKKVVCN TTANTEENTN LEFVESESAG FRSRVSTLFE
1861 SWYQICEVSG ANETACSQYV LHLHETGLLK GDNTTESFFR ILLELSVAHC ISSEEISSGA
1921 VQSPQQAQSP SFLIIDIYAK LVFSILKYLP EQESSSKLFL LSEIMAVTVR SIQKDAEDKK
1981 TSLNPRPYFR LFINWLLDLC SLDPGTDGAN FQVLSAFANA FHALQPLKIP AFSFAWLELV
2041 SHRSFMPKLL TVNGQKGWPY VQRLLVDLLQ FLEPFLRNAE LGGPVNFLYK GTLRVLLVLL
2101 HDFPEFLCDY HFTFCDVIPS SCIQMRNIIL SSFPRNMRLP DPSTPNLKID LLPEIVEAPC
2161 ILSEVDAALK AKQMKNDVDE YLALRQQNSA YLSELKQKLL LPSSEASSAG TRYSVPLINS
2221 LVLYTGIQAI QQLQAGETQA QNVVALHMFK YLSMELDTEG RYLFLNAIAN QLRYPNNHTH
2281 YFSFIMLYLF FESDQEIVQE QITRVLLERL IVNRPHPWGL LITFIELIKN PRYGFWKQAF
2341 IRCAPEIEKL FESVARSCGG LKPPDEGMVS GWVSDNSH
//