LOCUS QOD50080.1 1043 aa PRT BCT 28-SEP-2020 DEFINITION Pseudomonas aeruginosa multidrug efflux RND transporter permease subunit MexD protein. ACCESSION CP058257-4984 PROTEIN_ID QOD50080.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Whole Genome Sequence of an extensively Drug resistant Pseudomonas aeruginosa JOURNAL Unpublished REFERENCE 2 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Direct Submission JOURNAL Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences, Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2020 Assembly Method :: SOAPdenovo v. 1.05 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 100.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/29/2020 17:07:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 6,083 CDSs (total) :: 6,023 Genes (coding) :: 5,942 CDSs (with protein) :: 5,942 Genes (RNA) :: 60 tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 6 of 81 Pseudo Genes (frameshifted) :: 33 of 81 Pseudo Genes (incomplete) :: 47 of 81 Pseudo Genes (internal stop) :: 7 of 81 Pseudo Genes (multiple problems) :: 10 of 81 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PA179" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:287" /country="Saudi Arabia: Khobar" /lat_lon="26.217192 N 50.197140 E" /collection_date="2017" /collected_by="Aisha Alamri" protein /gene="mexD" /locus_tag="HWH41_25165" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_253288.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSEFFIKRPN FAWVVALFIS LAGLLVISKL PVAQYPNVAP PQITITATYP GASAKVLVDS 61 VTSVLEESLN GAKGLLYFES TNNSNGSAEI VVTFEPGTDP DLAQVDVQNR LKKAEARMPQ 121 AVLTQGLQVE QTSAGFLLIY ALSYKEGAQR SDTTALGDYA ARNINNELRR LPGVGKLQFF 181 SSEAAMRVWI DPQKLVGFGL SIDDVSNAIR GQNVQVPAGA FGSAPGSSAQ ELTATLAVKG 241 TLDDPQEFGQ VVLRANEDGS LVRLADVARL ELGKESYNIS SRLNGTPTVG GAIQLSPGAN 301 AIQTATLVKQ RLAELSAFFP EDMQYSVPYD TSRFVDVAIE KVIHTLIEAM VLVFLVMFLF 361 LQNVRYTLIP SIVVPVCLLG TLMVMYLLGF SVNMMTMFGM VLAIGILVDD AIVVVENVER 421 IMAEEGISPA EATVKAMKQV SGAIVGITLV LSAVFLPLAF MAGSVGVIYQ QFSVSLAVSI 481 LFSGFLALTF TPALCATLLK PIPEGHHEKR GFFGAFNRGF ARVTERYSLL NSKLVARAGR 541 FMLVYAGLVA MLGYFYLRLP EAFVPAEDLG YMVVDVQLPP GASRVRTDAT GEELERFLKS 601 REAVASVFLI SGFSFSGQGD NAALAFPTFK DWSERGAEQS AAAEIAALNE HFALPDDGTV 661 MAVSPPPING LGNSGGFALR LMDRSGVGRE ALLQARDTLL GEIQTNPKFL YAMMEGLAEA 721 PQLRLLIDRE KARALGVSFE TISGTLSAAF GSEVINDFTN AGRQQRVVIQ AEQGNRMTPE 781 SVLELYVPNA AGNLVPLSAF VSVKWEEGPV QLVRYNGYPS IRIVGDAAPG FSTGEAMAEM 841 ERLAAQLPAG IGYEWTGLSY QEKVSAGQAT SLFALAILVV FLLLVALYES WSIPLSVMLI 901 VPIGAIGAVL AVMVSGMSND VYFKVGLITI IGLSAKNAIL IVEFAKELWE QGHSLRDAAI 961 EAARLRFRPI IMTSMAFILG VIPLALASGA GAASQRAIGT GVIGGMLSAT FLGVLFVPIC 1021 FVWLLSLLRS KPAPIEQAAS AGE //