LOCUS       QOD48686.1               948 aa    PRT              BCT 28-SEP-2020
DEFINITION  Pseudomonas aeruginosa RNA polymerase-associated protein
            RapA protein.
ACCESSION   CP058257-3519
PROTEIN_ID  QOD48686.1
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6580692)
  AUTHORS   Alamri,A.M. and Alnimr,A.M.
  TITLE     Whole Genome Sequence of an extensively Drug resistant Pseudomonas
            aeruginosa
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6580692)
  AUTHORS   Alamri,A.M. and Alnimr,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences,
            Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 20-JUN-2020
            Assembly Method           :: SOAPdenovo v. 1.05
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 100.0x
            Sequencing Technology     :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/29/2020 17:07:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 6,083
            CDSs (total)                      :: 6,023
            Genes (coding)                    :: 5,942
            CDSs (with protein)               :: 5,942
            Genes (RNA)                       :: 60
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 6 of 81
            Pseudo Genes (frameshifted)       :: 33 of 81
            Pseudo Genes (incomplete)         :: 47 of 81
            Pseudo Genes (internal stop)      :: 7 of 81
            Pseudo Genes (multiple problems)  :: 10 of 81
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="PA179"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:287"
                     /country="Saudi Arabia: Khobar"
                     /lat_lon="26.217192 N 50.197140 E"
                     /collection_date="2017"
                     /collected_by="Aisha Alamri"
     protein         /gene="rapA"
                     /locus_tag="HWH41_17780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005732270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAQYQPGQRW ISDSEAELGL GTILAQDGRL LTVLYPATGD TRQYALRNAP LTRVRFAPGD
       61 EVTHFEGWKM TVREVEESEG LLVYHGLTAQ NEQRTLPETQ LSNFIQFRLA SDRLFAGQID
      121 PLPWFSLRYH TLERRSQLLQ SSLWGLGGAR AQPIAHQLHI AREVADRMAP RVLLADEVGL
      181 GKTIEAGLII HRQLLSGRAG RVLILVPENL QHQWLVEMRR RFNLQVALFD KERFAESDAS
      241 NPFEDTQLAL VALEWLKEDE RAQDALFAAG WDLLVVDEAH HLVWHQDQVS AEYALVEQLA
      301 EIIPGVLLLT ATPEQLGQDS HFARLRLLDP NRFHDLEAFR RESEQYRPVA EAVQELLDHG
      361 NLSAGARTAI HGFLGSEGDE LLASVEGGDE DARSRLVREL LDRHGTGRVL FRNTRAAVQG
      421 FPQRELHAYP LPMPSQYQEL PAGEHPDLYP EVNFQQQWED GDDNNRWWRF DPRVEWLIDT
      481 LKMLKQFKVL VICAHAETAL DLEDALRLRS GISATVFHEG MSILERDRAA AYFADEEFGA
      541 QVLICSEIGS EGRNFQFAHH LVLFDLPAHP DLLEQRIGRL DRIGQRHTIQ LHVPHLENSA
      601 QQRLFQWYHQ ALNAFLNTCP TGNALQHEFG PRLLPLLDGG EDKAWDALLA EGRARREALE
      661 AELHSGRDRL LELNSGGAGE GEALVEAIEE QDDDFALPIY MERLFDAYGI HSEDHSENAL
      721 ILKPSEKMLD AGFPLGDDEG VTITYDRAQA LAREDMQFLT WEHPMVQGGM DLVLSGSMGN
      781 TSVALIKNKA LKPGTVLLEL LFVSEAVAPR ALQLGRWLPP QALRCLLDAN GNDLAGRVSL
      841 ETLNDQLESV PRVSANKFVQ AQRDVLAKQF DVAEGKIVPR HEERVARAKQ QFAAAMDEEL
      901 ARLTALKAVN PSVRDSELDS LRTQREEGLA LLDKASLRLE AIRILVAG
//