LOCUS QOD47584.1 416 aa PRT BCT 28-SEP-2020 DEFINITION Pseudomonas aeruginosa OprD family porin protein. ACCESSION CP058257-2367 PROTEIN_ID QOD47584.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Whole Genome Sequence of an extensively Drug resistant Pseudomonas aeruginosa JOURNAL Unpublished REFERENCE 2 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Direct Submission JOURNAL Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences, Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2020 Assembly Method :: SOAPdenovo v. 1.05 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 100.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/29/2020 17:07:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 6,083 CDSs (total) :: 6,023 Genes (coding) :: 5,942 CDSs (with protein) :: 5,942 Genes (RNA) :: 60 tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 6 of 81 Pseudo Genes (frameshifted) :: 33 of 81 Pseudo Genes (incomplete) :: 47 of 81 Pseudo Genes (internal stop) :: 7 of 81 Pseudo Genes (multiple problems) :: 10 of 81 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PA179" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:287" /country="Saudi Arabia: Khobar" /lat_lon="26.217192 N 50.197140 E" /collection_date="2017" /collected_by="Aisha Alamri" protein /locus_tag="HWH41_11915" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_250903.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTRSAPNLLK SASLAPVLLA GLPSLAGAEG FIEDASVSLG LRNLYFNRDF RQPGAAQSKQ 61 DEWAQGFLLQ AKSGYTQGTL GLGVELIGQL GLKLDSSPDR AGSGLLPRHA DGRAADDYAR 121 LGVAPKLKLS NTELKLGELL PELPILLRND GRLLPQTFQG GMLTSREIAG LTLHGGQMRS 181 LSQRNSSDHQ DLSVDGRGGV FSDRFDYLGA EYRFNAERSQ VGLWQARLQD IYRQDYYSLS 241 HKQSFGGWRL GASVGLFDTR DEGAAKLGDL ENRALTGFFS ATRGRHSLGA GYQRMYGDDG 301 MLYIAGTSTP LVNDIQVRNF TSAGERSWQL RYDYDFVALG IPGLTAMARY ASGAHARTKA 361 MDDGRAWERD VDVSYVIQSG PLKNLGLRWR NAMLRSNHAA DVDENRLILS YSLPLL //