LOCUS       QOD46015.1               933 aa    PRT              BCT 28-SEP-2020
DEFINITION  Pseudomonas aeruginosa LPS-assembly protein LptD protein.
ACCESSION   CP058257-721
PROTEIN_ID  QOD46015.1
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6580692)
  AUTHORS   Alamri,A.M. and Alnimr,A.M.
  TITLE     Whole Genome Sequence of an extensively Drug resistant Pseudomonas
            aeruginosa
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6580692)
  AUTHORS   Alamri,A.M. and Alnimr,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences,
            Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 20-JUN-2020
            Assembly Method           :: SOAPdenovo v. 1.05
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 100.0x
            Sequencing Technology     :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/29/2020 17:07:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 6,083
            CDSs (total)                      :: 6,023
            Genes (coding)                    :: 5,942
            CDSs (with protein)               :: 5,942
            Genes (RNA)                       :: 60
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 6 of 81
            Pseudo Genes (frameshifted)       :: 33 of 81
            Pseudo Genes (incomplete)         :: 47 of 81
            Pseudo Genes (internal stop)      :: 7 of 81
            Pseudo Genes (multiple problems)  :: 10 of 81
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="PA179"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:287"
                     /country="Saudi Arabia: Khobar"
                     /lat_lon="26.217192 N 50.197140 E"
                     /collection_date="2017"
                     /collected_by="Aisha Alamri"
     protein         /locus_tag="HWH41_03615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_249286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAVKSLVFRR KFPLLVTGSL LALQPVAALT VQAADQFDCK VSATGGWDCS PLQNANANLP
       61 PRPAHTATSV STAAAGTSVS GSGGETVEAE PTQRLVTESG GRALKSRSAD YSHLDWIPRE
      121 KLTAAQLAEI GPYCGGSYIE PVRPGMDDGA PSDESPTYVS AKASRYEQEK QIATLAGDVV
      181 LRQGSMQVEG DEANLHQLEN RGELVGNVKL RDKGMLVVGD HAQVQLDNGE AQVDNAEYVI
      241 HKAHARGSAL YAKRSENAII MLKDGTYTRC EPSSNAWTLK GNNVKLNPAT GFGTATNATL
      301 RVKDFPVFYT PYIYFPIDDR RQSGFLPPSF SSTSDTGFTL VTPYYFNLAP NYDATLYPRY
      361 MAKRGMMLEG EFRYLTHSSE GMVTAAYLND KDDHRENFPD YSKDRWLYGL KNTTGLDSRW
      421 LAEVDYTRIS DPYYFQDLNS DLQVGSTTYV NQQGALTYRG DTFTARLNAQ SYQLATTTDI
      481 TPYDRLPQIT FNGFLPYNPG GLKLDYSTEF VRFDRDLDEN VYFNDDGSIR GQRPDAYLEG
      541 LARATGDRMH LEPGVSLPMT RSWGYLTPTL KYLYTKYDLD LDSKGKNSLN VYQETFDSNQ
      601 DRSLPLVKID SGLYFDRDTS FAGTQFRQTL EPRAMYLYVP YKNQENIPVF DTSEPSFSYD
      661 SLWRENRFSG RDRIGDANQL SLGVTTRFIE SNGFERATLS AGQIYYFRDR RVQLPGLSEK
      721 DLDLLEQKRL EDPALPEVKR PDTDSWRSPY ALAGLYRFNR DWNVTSDFNW NPNTSRTESG
      781 SAMFHYQPEN NPNKVVNAGY RYREDSRRFN SSTGRFEYGR ENDIIKQHDF SVIWPLVPQW
      841 SVLARWQYDY NKNRTLEAFG GFEYDSCCWK LRLINRYWLD VDDDAFLVQS EKADRGIFLQ
      901 IVLKGLGGIV GNKTEMFLDK GIQGYRQRED QAM
//