LOCUS QOD45574.1 444 aa PRT BCT 28-SEP-2020 DEFINITION Pseudomonas aeruginosa OprD family porin protein. ACCESSION CP058257-256 PROTEIN_ID QOD45574.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Whole Genome Sequence of an extensively Drug resistant Pseudomonas aeruginosa JOURNAL Unpublished REFERENCE 2 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Direct Submission JOURNAL Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences, Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2020 Assembly Method :: SOAPdenovo v. 1.05 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 100.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/29/2020 17:07:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 6,083 CDSs (total) :: 6,023 Genes (coding) :: 5,942 CDSs (with protein) :: 5,942 Genes (RNA) :: 60 tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 6 of 81 Pseudo Genes (frameshifted) :: 33 of 81 Pseudo Genes (incomplete) :: 47 of 81 Pseudo Genes (internal stop) :: 7 of 81 Pseudo Genes (multiple problems) :: 10 of 81 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PA179" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:287" /country="Saudi Arabia: Khobar" /lat_lon="26.217192 N 50.197140 E" /collection_date="2017" /collected_by="Aisha Alamri" protein /locus_tag="HWH41_01280" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_248852.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRNLFALTPM ALALCTASAA WADEGEAKEG FIEGSSLQLL TRNYYFNHDR RHASGHDSKE 61 WAQGFIATFQ SGYTPGVVGF GVDAYGMLGL KLDGGGGTGG TSILPITAPS KEGYESGKAP 121 DEFSSGGAAL KIRAFDTELK LGDQFLSNPV VAGGESRMLP QTFRGVSLTN NSFEDLTLTA 181 GQVSFTKYYN QSGHRRLGSY YGELPGDRDS HHLSWLGGTW GGIEGFTSSL YAAELQNVWK 241 QYYADVDYTY EIDDNWSLNP GAHYYKTVDS GDSLLGRIDN NTYSLHFAVG YRQHTVTAVL 301 QKVNGNTPFD YINQGDSIFL DNSQQYSDFN GPNEKSWKLQ YDYDFVALGL PGLSASASYS 361 RGKLDLTRVD PDSPGYGGWY SADGKNAKHW ERDLDLQYVV QGGPAKDLSL RLRWATHRGT 421 GGYSAVDNDI DEYRVIVDYP IDVF //