LOCUS QOD45571.1 1015 aa PRT BCT 28-SEP-2020 DEFINITION Pseudomonas aeruginosa triclosan efflux RND transporter permease subunit TriC protein. ACCESSION CP058257-253 PROTEIN_ID QOD45571.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Whole Genome Sequence of an extensively Drug resistant Pseudomonas aeruginosa JOURNAL Unpublished REFERENCE 2 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Direct Submission JOURNAL Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences, Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2020 Assembly Method :: SOAPdenovo v. 1.05 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 100.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/29/2020 17:07:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 6,083 CDSs (total) :: 6,023 Genes (coding) :: 5,942 CDSs (with protein) :: 5,942 Genes (RNA) :: 60 tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 6 of 81 Pseudo Genes (frameshifted) :: 33 of 81 Pseudo Genes (incomplete) :: 47 of 81 Pseudo Genes (internal stop) :: 7 of 81 Pseudo Genes (multiple problems) :: 10 of 81 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PA179" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:287" /country="Saudi Arabia: Khobar" /lat_lon="26.217192 N 50.197140 E" /collection_date="2017" /collected_by="Aisha Alamri" protein /gene="triC" /locus_tag="HWH41_01265" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_248848.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKGGFNLSDW ALRHQSLVWY LMAVSLVMGV FSYLNLGREE DPSFAIKTMV IQTRWPGATV 61 DDTLEQVTDR IEKKLEELDS LDYVKSYTRP GESTVFVYLK DTTKAGDIPD IWYQVRKKIS 121 DIQGEFPQGI QGPGFNDEFG DVFGSVYAFT ADGLDFRQLR DYVEKVRLDI RSVKDLGKVQ 181 MIGAQNEVIY LNFSTRKLAA LGLDQRQVVQ SLQAQNAVTP SGVVEAGPER ISVRTSGNFR 241 SEKDLQAVNL RVNDRFYRLS DLASISRDFV DPPTSLFRYK GEPAIGLAVA MKEGGNILEF 301 GEALNARMQE ITGELPVGVG VHQVSNQAQV VKKAVGGFTQ ALFEAVVIVL IVSFVSLGLR 361 AGLVVACSIP LVLAMVFVFM EYTDITMQRV SLGALIIALG LLVDDAMITV EMMITRLELG 421 DSLHDSATYA YTSTAFPMLT GTLVTVAGFV PIGLNASSAG EYTFTLFAVI AVALLLSWIV 481 AVLFAPVIAV HILPKTLKHK SEQKKGRIAE RFDSLLHLAM RRRWTTIFLT ALLFGVSLFL 541 MKFVQHQFFP SSDRPELLVD LNLPQNSSIH ETRAVMDRLE ATLKDDEDID HWSAYVGEGA 601 IRFYLPLDQQ LQNNFYGQLV IVTKDLEARE RVAARLRDRL RKDYVGISTY VQPLEMGPPV 661 GRPIQYRVSG PQIDKVREYA MGLAGVLDGN PNIGDIVYDW NEPGKMLKID IAQDKARQLG 721 LSSEDVAQIM NSVVTGSAVT QVRDDIYLVN VIGRAEDSER GSLETLESLQ IVTPSGTSIP 781 LKAFAKVSYE LEQPLVWRRD RKPTITVKAS LRGEIQPTDL VARLAPEVKR FADGLPANYR 841 IEVGGTVEES GKAEGPIAKV VPLMLFLMAT FLMIQLQSVQ KLFLVASVAP LGLIGVVAAL 901 LPTGTPMGFV AILGILALIG IIIRNSVILV TQIDAFEKDG KTPWEAVLEA THHRTRPILL 961 TAAAASLGMI PIAREVFWGP MAYAMIGGIV AATLLTLIFL PALYVAWYRI PEPGR //