LOCUS QOD45499.1 498 aa PRT BCT 28-SEP-2020 DEFINITION Pseudomonas aeruginosa type VI secretion system contractile sheath large subunit protein. ACCESSION CP058257-177 PROTEIN_ID QOD45499.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Whole Genome Sequence of an extensively Drug resistant Pseudomonas aeruginosa JOURNAL Unpublished REFERENCE 2 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Direct Submission JOURNAL Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences, Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2020 Assembly Method :: SOAPdenovo v. 1.05 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 100.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/29/2020 17:07:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 6,083 CDSs (total) :: 6,023 Genes (coding) :: 5,942 CDSs (with protein) :: 5,942 Genes (RNA) :: 60 tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 6 of 81 Pseudo Genes (frameshifted) :: 33 of 81 Pseudo Genes (incomplete) :: 47 of 81 Pseudo Genes (internal stop) :: 7 of 81 Pseudo Genes (multiple problems) :: 10 of 81 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PA179" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:287" /country="Saudi Arabia: Khobar" /lat_lon="26.217192 N 50.197140 E" /collection_date="2017" /collected_by="Aisha Alamri" protein /gene="tssC" /locus_tag="HWH41_00885" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_248774.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MAELSTENLA QGQTTTEQTS EFASLLLQEF KPKTERAREA VETAVRTLAE HALEQTSLIS 61 NDAIKSIESI IAAIDAKLTA QVNLIMHHAD FQQLESAWRG LHYLVNNTET DEQLKIRVLN 121 ISKPELHKTL KKFKGTTWDQ SPIFKKLYEE EYGQFGGEPY GCLVGDYYFD QSPPDVELLG 181 EMAKISAAMH APFISAASPT VMGMGSWQEL SNPRDLTKIF TTPEYAGWRS LRESEDSRYI 241 GLTMPRFLAR LPYGAKTDPV EEFAFEEETD GADSSKYAWA NSAYAMAVNI NRSFKLYGWC 301 SRIRGVESGG EVQGLPAHTF PTDDGGVDMK CPTEIAISDR REAELAKNGF MPLLHKKNTD 361 FAAFIGAQSL QKPAEYDDPD ATANANLAAR LPYLFATCRF AHYLKCIVRD KIGSFKEKDE 421 MQRWLQDWIL NYVDGDPAHS TETTKAQHPL AAAEVVVEEV EGNPGYYNSK FFLRPHYQLE 481 GLTVSLRLVS KLPSAKEA //