LOCUS QOD45492.1 1176 aa PRT BCT 28-SEP-2020 DEFINITION Pseudomonas aeruginosa type VI secretion system membrane subunit TssM protein. ACCESSION CP058257-170 PROTEIN_ID QOD45492.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Whole Genome Sequence of an extensively Drug resistant Pseudomonas aeruginosa JOURNAL Unpublished REFERENCE 2 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Direct Submission JOURNAL Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences, Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2020 Assembly Method :: SOAPdenovo v. 1.05 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 100.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/29/2020 17:07:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 6,083 CDSs (total) :: 6,023 Genes (coding) :: 5,942 CDSs (with protein) :: 5,942 Genes (RNA) :: 60 tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 6 of 81 Pseudo Genes (frameshifted) :: 33 of 81 Pseudo Genes (incomplete) :: 47 of 81 Pseudo Genes (internal stop) :: 7 of 81 Pseudo Genes (multiple problems) :: 10 of 81 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PA179" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:287" /country="Saudi Arabia: Khobar" /lat_lon="26.217192 N 50.197140 E" /collection_date="2017" /collected_by="Aisha Alamri" protein /gene="tssM" /locus_tag="HWH41_00850" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003176940.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKGFLNFFAR WVVPVLGLLA LSLIIWFLGP LLRLGNYEPL ASATSRWVLI VLLFLVWIGF 61 RVLRIVQARR NAAKVMQSLA EVSAPDAASV ATAEELATLK QRMDEALALL KRAKLGGSER 121 RNLYELPWYV IIGPPGSGKT TALMNSGLDF PLAAQMGAGA IRGVGGTRNC DWWFTDEAVL 181 LDTAGRYTTQ DSHAQVDKAA WLGFLDLLKT QRKRRPIDGA FIAISLSDLL LGSDAERAAH 241 AQAIRARIQE LYQQLGVRFP IYVMLTKFDL VPGFMEFFDS LNREERAQVW GMTFALDDGK 301 SAEGPLAVFD SEFALLEQRL TARLVERLQQ ERDPARRDLV YGFPQQFAAL RECLGEFLNG 361 VFKPNPYEER PLLRGLYFTS GTQEGSPIDR LIGSMAQSMN LDRQHLARQT GTGRSYFIER 421 LFREVAFGER GLVGTNPKVE RRRKWLTIGA LSATALVVLA VTAVWIASYR ANQSYIAAVD 481 QRVDPLARGI ESLSPAQRDV LAVLPQLNAV QNLAGDAPSW AEGYGLYQGD MLGEESASVY 541 RKLLIAVFAP RLVTRIEEQL RSGGSSDFLY EGLKAYLMLG SPDHYDADFI KAWISLDWER 601 NLPRDLSPEQ RQALHAHLDA LLERRPPSAR LDQDLVEDLR RQLQQLPVAQ RVYDRVKRQR 661 LPKDVPDFRI SDAAGRDAPL VFARKSGKPL TDPLSGFFTY RGYREVFLTA SLSQAGTIAE 721 EQWVLGRDLN DAGDAANLAL DVRRLYFQDY LRQWDDLLAD LTVVPITNVT QAADVLRILS 781 GPTSPFRKLL EAVARETDLQ KGDRLVAAQV KKAADGTVDK LKQRLGSLVG QEEEGAREQP 841 RQVDSDPISA HFAELNSLVS KGEGGNEPAP IDSLLEDMNA LYVQVSAMAG ASGDSLLGDA 901 KNQVAAAASR VALSAERQPP VVQGLVKNVV NSTTSSMMGS VRNQLNAAWI SDVVSVYRQS 961 LAGRYPIAAG SSRDATLEDF GHFFGAGGVM DSYFRQYLQP YVDTSASTWR WQPGAAQKLG 1021 INPGVLHTFQ RAAAIRDAFF RSGGMQPAVR FELKPVTMDA AISQFILDLD GQQLTYDHGP 1081 ARPVAMQWPS ANGLGVVRLT VTPPPSSGRS GLTLEGPWAW FRLLDQSDLE RGNSPDRFTL 1141 RLRIDGSSIA CELRASSAFN PFKSRVVSGF SLPERL //