LOCUS QOD45420.1 700 aa PRT BCT 28-SEP-2020 DEFINITION Pseudomonas aeruginosa site-specific integrase protein. ACCESSION CP058257-84 PROTEIN_ID QOD45420.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Whole Genome Sequence of an extensively Drug resistant Pseudomonas aeruginosa JOURNAL Unpublished REFERENCE 2 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Direct Submission JOURNAL Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences, Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2020 Assembly Method :: SOAPdenovo v. 1.05 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 100.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/29/2020 17:07:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 6,083 CDSs (total) :: 6,023 Genes (coding) :: 5,942 CDSs (with protein) :: 5,942 Genes (RNA) :: 60 tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 6 of 81 Pseudo Genes (frameshifted) :: 33 of 81 Pseudo Genes (incomplete) :: 47 of 81 Pseudo Genes (internal stop) :: 7 of 81 Pseudo Genes (multiple problems) :: 10 of 81 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PA179" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:287" /country="Saudi Arabia: Khobar" /lat_lon="26.217192 N 50.197140 E" /collection_date="2017" /collected_by="Aisha Alamri" protein /locus_tag="HWH41_00420" /inference="COORDINATES: protein motif:HMM:NF012798.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTTPTRDQIK AVLEEIRNGL GCHEEESEPI ATEEDDEILS GDSSLGIICD SINLLNLSRI 61 DKNEWSYIRV SPRSSFGDPV WDFGDYPSPN GFPIRINFDY VNMYGVNVCG VGHEHWVNIA 121 RALLFYRVPH FGIHGRINAY TSLESDKTKV LRLVGLFQAE GLYLGSENSP DFRTVNDLAK 181 SSVEHYIESL PTSGIKWEFC YLMSFWQGVS SMGMLPSEYS LYDSYVTKEL VAKYRREYDE 241 SSRPFEPIPL DDYAEIFRYC VGFVENYSDD VLWLYKNFAP TIVGAFENPG KLAAMNIGVS 301 TASVEGVKRF RAYKPKLLDS GIPWWGIEIK ERTHENDEGE YINQTAVISV VVSLIDACIV 361 LLLCLTGMRR SEVIGLKVDC LSFKSEGYWL TYTVFKTSIS SQGDIKTIPI PKIAADAIEV 421 IIEIGRDARA YGNHDYLFVK IPKLSFGNTP QSTVVERACN RVANNLGIDY RVHPHRFRKS 481 LALYIIHQDS RNLEIIKRLF SHRSLKMTLR YILSLPGMND EVKATLIEEN TEILVEVLQG 541 VISGQIGGIG GKRLAKTANS SPILRAKLQN AGKESLSQYV ASLLDEGVKL LHRTNLAICM 601 RTPGLSSESP CDAKNDSPGS RLHPNLFACD PYNCRYAAFV EANAPSLKNE IIFHDNMIKH 661 RYCGATQKEY SQRRIAEAFK RLHEVVGDEA HNFLKQVAHG //