LOCUS QOD45395.1 457 aa PRT BCT 28-SEP-2020 DEFINITION Pseudomonas aeruginosa T3SS effector bifunctional cytotoxin exoenzyme T protein. ACCESSION CP058257-57 PROTEIN_ID QOD45395.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Whole Genome Sequence of an extensively Drug resistant Pseudomonas aeruginosa JOURNAL Unpublished REFERENCE 2 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Direct Submission JOURNAL Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences, Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2020 Assembly Method :: SOAPdenovo v. 1.05 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 100.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/29/2020 17:07:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 6,083 CDSs (total) :: 6,023 Genes (coding) :: 5,942 CDSs (with protein) :: 5,942 Genes (RNA) :: 60 tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 6 of 81 Pseudo Genes (frameshifted) :: 33 of 81 Pseudo Genes (incomplete) :: 47 of 81 Pseudo Genes (internal stop) :: 7 of 81 Pseudo Genes (multiple problems) :: 10 of 81 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PA179" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:287" /country="Saudi Arabia: Khobar" /lat_lon="26.217192 N 50.197140 E" /collection_date="2017" /collected_by="Aisha Alamri" protein /gene="exoT" /locus_tag="HWH41_00285" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_248734.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MHIQSSQQNP SFVAELSQAV AGRLGQVEAR QVATPREAQQ LAQRQEAPKG EGLLSRLGAA 61 LARPFVAIIE WLGKLLGSRA HAATQAPLSR QDAPPAASLS AAEIKQMMLQ KALPLTLGGL 121 GKASELATLT AERLAKDHTR LASGDGALRS LATALVGIRD GSRIEASRTQ AARLLEQSVG 181 GIALQQWGTA GGAASQHVLS ASPEQLREIA VQLHAVMDKV ALLRHAVESE VKGEPVDKAL 241 ADGLVEHFGL EAEQYLGEHP DGPYSDAEVM ALGLYTNGEY QHLNRSLRQG RELDAGQALI 301 DRGMSAAFEK SGPAEQVVKT FRGTQGRDAF EAVKEGQVGH DAGYLSTSRD PGVARSFAGQ 361 GTITTLFGRS GIDVSEISIE GDEQEILYDK GTDMRVLLSA KDGQGVTRRV LEEATLGERS 421 GHGEGLLDAL DLATGTDRSG KPQEQDLRLR MRGLDLA //