LOCUS QOD45350.1 1626 aa PRT BCT 28-SEP-2020 DEFINITION Pseudomonas aeruginosa DEAD/DEAH box helicase protein. ACCESSION CP058257-5 PROTEIN_ID QOD45350.1 SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Whole Genome Sequence of an extensively Drug resistant Pseudomonas aeruginosa JOURNAL Unpublished REFERENCE 2 (bases 1 to 6580692) AUTHORS Alamri,A.M. and Alnimr,A.M. TITLE Direct Submission JOURNAL Submitted (21-JUN-2020) Department of Clinical Laboratory Sciences, Imam Abdulrahman Bin Faisal University, Dammam 35211, Saudi Arabia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2020 Assembly Method :: SOAPdenovo v. 1.05 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 100.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/29/2020 17:07:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 6,083 CDSs (total) :: 6,023 Genes (coding) :: 5,942 CDSs (with protein) :: 5,942 Genes (RNA) :: 60 tRNAs :: 56 ncRNAs :: 4 Pseudo Genes (total) :: 81 CDSs (without protein) :: 81 Pseudo Genes (ambiguous residues) :: 6 of 81 Pseudo Genes (frameshifted) :: 33 of 81 Pseudo Genes (incomplete) :: 47 of 81 Pseudo Genes (internal stop) :: 7 of 81 Pseudo Genes (multiple problems) :: 10 of 81 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="PA179" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:287" /country="Saudi Arabia: Khobar" /lat_lon="26.217192 N 50.197140 E" /collection_date="2017" /collected_by="Aisha Alamri" protein /locus_tag="HWH41_00025" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_020312235.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSALSALLHT FRSASVTERE KGTYFEELIC AYLRNEATYR DLYDKVWTYA DWAKEQGLSG 61 KDAGIDLVAR TQGTGEYHAI QCKLYAEDYK VQKKDIDSFF TASGKAPFSH RVIVTTTNNW 121 SEHAEDALQG QQPPVSKIDL QALEDSQVDW AKYQPNQAVV LKARKQLRDH QQTALNAVVA 181 GLKDAERGKL IMACGTGKTF TSLKIAEQQA GKGKRVLFLV PSLSLLSQTL TEWTQESATL 241 LHSFAVCSDS DVGKKRKAED DAVQVFTHEL RYPATTKADR LASEMLKRHD AEHMSVVFST 301 YHSIDVISRA QADHGLPAFD LVICDEAHRT TGATFGDDDE SNFVRIHDGD YIRAAKRLYM 361 TATPRIYGDS AKIKAESGEV TLCSMDDEAL YGKELFVINF SEAVQRGLLT DYKVLVLTVE 421 ESTISRRLQD MLKDENNQLK VDDAAKIVGC WKALAKQGLH EQLIGDDEPM KRAVAFCQVI 481 SPNYKGTKHK VSSINIASMF QAVVEAYQES EEIDEASRLI CEAEHVDGGM NASAKEAKLN 541 WLKEEPLANT CRILSNVRCL SEGVDVPALD AVLFLTPRNS QVDVVQSVGR VMRNAPGKKR 601 GYVVLPVVIP AGMEPHEALN DNQTYKVVWQ VLQALRSHDD SFDAMVNKLD LIGSDPRKME 661 VIAITDKAEK NAKKATGTTN GKAGKGQYGI GSKNHDVPGQ MTQQAELTYE VGEIEKAIYA 721 KIVEKCGNRH HWEDWANDIA KIARTHIDRI QGILENPANT QEQAAFNVFA AELRDDLNDS 781 ISDGEIVEML AQHLVTKPVF DALFDEYSFA SHNPMSKAMQ GVLDALHEHH LAKEADTLEK 841 FYASVRQRAA GIDNAQGKQK IIVELYDKFF RNAFPKMTER LGIVYTPVEV VDFILHSVNH 901 LLQQEFGQTL GSKGVHIIDP FTGTGTFITR LIQSGLIKPE ELPHKYKHEI HANELVLLAY 961 YIAAINIEAA YHGEVIDEYT PFEGICLTDT FQMYEKEDLI DEVLVDNSAR RKRQKALDIR 1021 VIVGNPPYSV GQKSENDNND NVDYPKLDAD IRATYAARSS ATLAKGLYDS YIRAIRWASN 1081 RIGDTGIIGF VTNAGFLDAN TTDGLRKCLA DEFSSLYVFH LRGNQRTSGE TSRKEGGKIF 1141 GSGSRAPIAI SLLVKNPAAQ GHGQIYFHDI GDYLSREEKL EKVAGYASVA GIEQWQRITP 1201 DEHGDWLKQR DNSFNRFIVL GEKKSDAPKL FENFSLGVVT NRDAWAYNAS QSKLATNMTS 1261 MIGFYNGEVE RFNAKYSGLD TKARQAQVDG FIDTDPTRIS WTHNVKQDLV RNHIYAFESG 1321 NMVSSLYRPF TKQWLYYNRR FNERVYQMPR IFPDAGTENL VIGVSAAGEK VAFSALISRH 1381 VPSLHFVDIE GSQCFPLYLY DEAAQASDSD LFAEPIDGGL RRRDAVTDAG LAHFQSAYPG 1441 ESLSKEDLFY YVYGILHSPD YRERFADNLS KELPRIPAVK KAADFWAFSQ AGRALADLHL 1501 NYETVEPYPL TIEAKSPLTG ADYRVEKMKF AKKGDKSTVI YNHRITLKDI PRAAWDYVVN 1561 GKAALDWVME RQAVRTDKAS GIVNDANDWA IETMGNPKYP LELFQRVVTV SLETTKIVKG 1621 LPPLDI //