LOCUS QLY33880.1 309 aa PRT BCT 27-JUL-2020 DEFINITION Nocardia huaxiensis RNA polymerase sigma-70 factor protein. ACCESSION CP059399-3556 PROTEIN_ID QLY33880.1 SOURCE Nocardia huaxiensis ORGANISM Nocardia huaxiensis Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia. REFERENCE 1 (bases 1 to 8339910) AUTHORS Zhuang,K. and Ran,Y. TITLE Direct Submission JOURNAL Submitted (21-JUL-2020) Dermatovenereology, West China Hospital, Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan 610041, China COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: FALCON v. AUGUST-2019 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 250.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/22/2020 23:23:33 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.12 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 7,641 CDSs (total) :: 7,551 Genes (coding) :: 7,450 CDSs (with protein) :: 7,450 Genes (RNA) :: 90 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 3 Pseudo Genes (total) :: 101 CDSs (without protein) :: 101 Pseudo Genes (ambiguous residues) :: 0 of 101 Pseudo Genes (frameshifted) :: 23 of 101 Pseudo Genes (incomplete) :: 76 of 101 Pseudo Genes (internal stop) :: 7 of 101 Pseudo Genes (multiple problems) :: 5 of 101 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Nocardia huaxiensis" /mol_type="genomic DNA" /strain="WCH-YHL-001" /isolation_source="skin sample from patient" /host="Homo sapiens" /type_material="type strain of Nocardia huaxiensis" /db_xref="taxon:2755382" /country="China: Chengdu" /collection_date="2013" /collected_by="Kaiwen Zhuang" protein /locus_tag="H0264_18020" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014742783.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MQDHSTDTPS ETAPARDATI DPFVEHRRLL FGTAYRMLGS VADAEDILQD TWLKWNAVDR 61 NSVEHPKSYL VRTVTNLSLN RLTSARATRE TYVGPWLPEP LLTTTADAAE ETEMADTVST 121 AMLVVLETLN PTERAVFVLR EVFGYSYAEI GGFLDRPEAT VRQISHRARS HVHSRRPRFD 181 ADDAARQEIT EKFMAACHGG DLNALMSLLA PEVTLWNDGG GLITAARRPL HGPDHVARWM 241 LGVMAKPASA GIRLESAVVN GELSIIGSIG DYRLGALTYD IREGRIENLR FQVNPQKLSG 301 IQAAGEPTA //