LOCUS QLY33534.1 444 aa PRT BCT 27-JUL-2020 DEFINITION Nocardia huaxiensis HAMP domain-containing histidine kinase protein. ACCESSION CP059399-3160 PROTEIN_ID QLY33534.1 SOURCE Nocardia huaxiensis ORGANISM Nocardia huaxiensis Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia. REFERENCE 1 (bases 1 to 8339910) AUTHORS Zhuang,K. and Ran,Y. TITLE Direct Submission JOURNAL Submitted (21-JUL-2020) Dermatovenereology, West China Hospital, Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan 610041, China COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: FALCON v. AUGUST-2019 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 250.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/22/2020 23:23:33 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.12 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 7,641 CDSs (total) :: 7,551 Genes (coding) :: 7,450 CDSs (with protein) :: 7,450 Genes (RNA) :: 90 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 3 Pseudo Genes (total) :: 101 CDSs (without protein) :: 101 Pseudo Genes (ambiguous residues) :: 0 of 101 Pseudo Genes (frameshifted) :: 23 of 101 Pseudo Genes (incomplete) :: 76 of 101 Pseudo Genes (internal stop) :: 7 of 101 Pseudo Genes (multiple problems) :: 5 of 101 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Nocardia huaxiensis" /mol_type="genomic DNA" /strain="WCH-YHL-001" /isolation_source="skin sample from patient" /host="Homo sapiens" /type_material="type strain of Nocardia huaxiensis" /db_xref="taxon:2755382" /country="China: Chengdu" /collection_date="2013" /collected_by="Kaiwen Zhuang" protein /locus_tag="H0264_16030" /inference="COORDINATES: protein motif:HMM:NF012722.1,HMM:NF012876.1,HMM:NF014567.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLRTRITLAT VAVVAAAIVG AMMLTYRAVA PLVVDQLERG MSDRADTVLA LVAANAPVPE 61 RADTTEQVLL PDGTVTHLTP GRKPLPVNDT DRAIARAGSG EAETEVAQDG AELAVLTKGR 121 PGGGAVMVAQ HHSEALRVEQ LDSEVRTRTM WITAAALAVA ALLCWLAIGG ILRPIRRLAA 181 TTARIADTQD LSTTLPDRHR GEVGDLTRNF NTMLAALRVS RAQQQRLAQD AAHELRTPLT 241 SVRGSAELLQ RAAGRLSPED EAKVLTTLVH EARALDDLVR ELVDLASDQY ATEDPIPLQL 301 ADLAEDCAAR CRRRTARLIT VTSASPATVQ ARTRALSRAI DNLLDNATKY SPPDTPVTVE 361 VSGPRLTVRD QGPGIPAADR PAIFDRFYRA DATRSTPGSG LGLAIVHDVI AAHGGAVHAA 421 PNPGGGAAVG FTLPTPRRGS APAL //