LOCUS QLY32560.1 762 aa PRT BCT 27-JUL-2020 DEFINITION Nocardia huaxiensis copper-translocating P-type ATPase protein. ACCESSION CP059399-1995 PROTEIN_ID QLY32560.1 SOURCE Nocardia huaxiensis ORGANISM Nocardia huaxiensis Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia. REFERENCE 1 (bases 1 to 8339910) AUTHORS Zhuang,K. and Ran,Y. TITLE Direct Submission JOURNAL Submitted (21-JUL-2020) Dermatovenereology, West China Hospital, Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan 610041, China COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: FALCON v. AUGUST-2019 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 250.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/22/2020 23:23:33 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.12 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 7,641 CDSs (total) :: 7,551 Genes (coding) :: 7,450 CDSs (with protein) :: 7,450 Genes (RNA) :: 90 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 3 Pseudo Genes (total) :: 101 CDSs (without protein) :: 101 Pseudo Genes (ambiguous residues) :: 0 of 101 Pseudo Genes (frameshifted) :: 23 of 101 Pseudo Genes (incomplete) :: 76 of 101 Pseudo Genes (internal stop) :: 7 of 101 Pseudo Genes (multiple problems) :: 5 of 101 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Nocardia huaxiensis" /mol_type="genomic DNA" /strain="WCH-YHL-001" /isolation_source="skin sample from patient" /host="Homo sapiens" /type_material="type strain of Nocardia huaxiensis" /db_xref="taxon:2755382" /country="China: Chengdu" /collection_date="2013" /collected_by="Kaiwen Zhuang" protein /locus_tag="H0264_10115" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019970837.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSAPAPERDQ LGGGSLPDSS LPVQSIELEI GGMTCASCAS RIEKKLNRMD GVTATVNYAT 61 EKAKVSFPES VSADDLIAKV VDTGYTASVH DPNPVKKTES EGDSAPSATQ QLRHRLLVSL 121 ALAIPVVAVA MVPALQFENW QWFSLTLTAP IVVWAGWQFH RAAWVNAKHG AATMDTLISL 181 GTLAAFGWSV YALFFGDAGM PGMKHPFSLA ITRGDSSSAL YFEVAATLIT AILAGRYFET 241 RSKEKAGSAL RALLELGAKD VAVLRNGVET RIPIGELHVG DEFLVRPGEK IATDGVVVSG 301 NSALDMSMLT GESVPVEVGP GDQVVGATVN AGGLLTVRAT RVGADTQLAQ MASLVEEAQN 361 GKAQVQRLAD RVAGVFVPIV IAIAVAALGF WLGTGVAVAT AFGAAVAVLI IACPCALGLA 421 TPTALLVGTG RGAQLGILIK GPQVLESTRR IDTVVLDKTG TVTTGKMTLA EVIPAEGVNS 481 DELLSVAAAV EHGSEHPVAR AVVSGAADRG LDTEQVEQFV SHGGKGVQGL VGERAVVIGR 541 TELLADWSVT LPESLAQAKS RAESAGHTAI AVAWDGVARG VLVIADAIKD TSAEAIADLK 601 ALGLTPVLLT GDNAAAARTV ADQVGIDEVI AEVLPADKLD VVKKLQEQGK VVAMVGDGVN 661 DAAALAQADL GLAMGTGTDV AIEAGDITLV RGDLRTVGTA IRLSRATLRT IKSNLFWAFG 721 YNVAAIPLAA AGLLNPMLAG AAMALSSVFV VSNSLRLRRF KG //