LOCUS QLY31949.1 1329 aa PRT BCT 27-JUL-2020 DEFINITION Nocardia huaxiensis WD40 repeat domain-containing protein protein. ACCESSION CP059399-1284 PROTEIN_ID QLY31949.1 SOURCE Nocardia huaxiensis ORGANISM Nocardia huaxiensis Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia. REFERENCE 1 (bases 1 to 8339910) AUTHORS Zhuang,K. and Ran,Y. TITLE Direct Submission JOURNAL Submitted (21-JUL-2020) Dermatovenereology, West China Hospital, Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan 610041, China COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: FALCON v. AUGUST-2019 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 250.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/22/2020 23:23:33 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.12 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 7,641 CDSs (total) :: 7,551 Genes (coding) :: 7,450 CDSs (with protein) :: 7,450 Genes (RNA) :: 90 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 3 Pseudo Genes (total) :: 101 CDSs (without protein) :: 101 Pseudo Genes (ambiguous residues) :: 0 of 101 Pseudo Genes (frameshifted) :: 23 of 101 Pseudo Genes (incomplete) :: 76 of 101 Pseudo Genes (internal stop) :: 7 of 101 Pseudo Genes (multiple problems) :: 5 of 101 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Nocardia huaxiensis" /mol_type="genomic DNA" /strain="WCH-YHL-001" /isolation_source="skin sample from patient" /host="Homo sapiens" /type_material="type strain of Nocardia huaxiensis" /db_xref="taxon:2755382" /country="China: Chengdu" /collection_date="2013" /collected_by="Kaiwen Zhuang" protein /locus_tag="H0264_06510" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /transl_table=11 BEGIN 1 MLVGDQPNIE PSSVRETADR QSRSPRGLFA QRFTELYAAA GNPTLRRVAT AAETRMRAAS 61 GNRPTGASAQ RISDWKAGRN VPARFESLLP VVLTLIDLAR KQDTPLPRHL AEPKEWQRLW 121 HAATTWNPEE EDEAACPYLG LNSYRRENRD LFFGRTRAAA DLTALVREAT GIIAVVGASG 181 AGKSSLLAAG LVPALPDWEV VSLTPGPHPL PALLHAATPP DSATPAPAEP ETEPGRPRRM 241 LVIDQFEELF TLCADEAERE QVLDLLHVCA TRPVDPLAVV IAIRADFYAH CLAHPALQEA 301 LEHRSFLLGP MRIDELAQAI TGPARSAGLE LEPGLEELVV TELCGVGDRP SRTYDPGALP 361 LLSHVMAATW QHREGRRLTI AGYRKAGGVV GSVAETAEQA WNELAPAQQH AAKAILLGLV 421 AVGQDSRDTR RTAPRRELLH RAPDPEDAAA ALELLSRTRL ITLDADTVGL THEIVLSAWP 481 RLHGWIDEDR VGYLVRQRLD ADASEWAAQD RDSSLLYHGT RLQNALDNVD PPPASPLARE 541 FLTASGLARN RIRRRSSRTR AVLAALGVVL LVLGFATYTQ TQLAQQRRDD KNFTTVLAEA 601 DRLAATDQSR AAQLYLIAER LRPNDSEVRA RILQTQNVPL MQPILGQPAD ISGVAYRADG 661 VLAAIGFDDA LRLWDVQDAR HPRQLGTQID GVRMAGFSAD GSRMVTAGYS EDIRLWDVRD 721 PSAPRETARL PGLSAKTMNE PVFVGNDLAV LSTTQFTLWD LSNPSVPVRG PSHRLFDDTR 781 PDESGVVVSR FEASPDGSLL AIISSPGTDV TVKTIQLWDI RNRAAPIKLT ERLVADQTAI 841 GDMVFNPSGT LLAISNEVQI SRQFIGSRAT VELWDVADRA HVSPLGTPLK AEDGDVPALT 901 FSPDGTTLVV SSGSRTALWN VTEPADPVLV TDQLVFDSGS CRYPDNSTYL CSSSASDLGF 961 SPDGRTLYAR DSSGKLVVWS LPPSVLTGHS GYLTTPQFDA TGDRMVTGSA DGRIIVWDIS 1021 TRQRPTRVGE YRMPADYYSM SLAPDGRTLL VSTARTVKTS VLDLSDPTRI RSRGDWSLPP 1081 QDSSPPYPIG DWSSMARIDE SGALQIWSLA DPMRPVLLTT VPVDPRYSWV SIDIAGQTLI 1141 AQQRDLASNG ELIVTRWDIS NPANPTALGE AFRHHEGVAH FSPDQRVMVI TAAEKLQSWD 1201 ISDPARPQPL ADAFAVHTST TWTVDFTPDG RTMLTASVDG APQLWDYTDP ADPRRMGGPL 1261 MDVGKEPWDA RFHPDGRFVV GNGSNGALRF WDLDEQHMID RICTATGNPW TPELWRRYLP 1321 DLDYDPPCD //