LOCUS       QLY31871.1              1347 aa    PRT              BCT 27-JUL-2020
DEFINITION  Nocardia huaxiensis type VII secretion protein EccCa protein.
ACCESSION   CP059399-1196
PROTEIN_ID  QLY31871.1
SOURCE      Nocardia huaxiensis
  ORGANISM  Nocardia huaxiensis
            Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae;
            Nocardia.
REFERENCE   1  (bases 1 to 8339910)
  AUTHORS   Zhuang,K. and Ran,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2020) Dermatovenereology, West China Hospital,
            Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan
            610041, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: FALCON v. AUGUST-2019
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/22/2020 23:23:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.12
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 7,641
            CDSs (total)                      :: 7,551
            Genes (coding)                    :: 7,450
            CDSs (with protein)               :: 7,450
            Genes (RNA)                       :: 90
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 23 of 101
            Pseudo Genes (incomplete)         :: 76 of 101
            Pseudo Genes (internal stop)      :: 7 of 101
            Pseudo Genes (multiple problems)  :: 5 of 101
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Nocardia huaxiensis"
                     /mol_type="genomic DNA"
                     /strain="WCH-YHL-001"
                     /isolation_source="skin sample from patient"
                     /host="Homo sapiens"
                     /type_material="type strain of Nocardia huaxiensis"
                     /db_xref="taxon:2755382"
                     /country="China: Chengdu"
                     /collection_date="2013"
                     /collected_by="Kaiwen Zhuang"
     protein         /gene="eccCa"
                     /locus_tag="H0264_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011207360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MVTEGFVRRP RIAPPRAPGG EVALTPPPEI QRPTPTPLLM KLMPVVMLIA VIGMIAMMAM
       61 MGRSLLSNPM MMMFPLMMIM SMVGMMMGVR GGGPKSAGEL NEERKDYFRY LAQLRKDVRG
      121 TGTKQLETLR WSHPEPVELP SLVGTRRMWE RRPADPDFGH VRVGLGSHRL ATKLARPETG
      181 PLEDLEPVST VALRRFVRTH SVVHELPTAV SLKAFPAINI GGELDEARTL VRAMLMELTA
      241 FHGPDHVAVA IVCADPDAPA WAWAKWLPHL QHPTARDGMG SARMVYGSLA ELETALSDEL
      301 LERGRFMRNP QPTQGRLHLV VVIDDGFVNG SERLVSDSGL DSVTVLDLTA PEYGLAARRG
      361 LQLVVTAGEI AARSAAGVEK FATADVIGVT EADAFARKLS RYRIATAAQI VSLGDETRAD
      421 PGLMALLKIP DAAQIEPSRV WRPRTARERL RVPIGVTPDG TPVEIDIKES AENGMGPHGL
      481 CIGATGSGKS EFLRTLVLSM VTTHSPDALN LVLVDFKGGA TFLGLEGLPH VSAVITNLEE
      541 ELALVDRMKD ALSGEMNRRQ ELLRSAGNYA NVTDYEKARA AGVPLDPLPA LFVVVDEFSE
      601 LLSQKPDFAD LFVMIGRLGR SLHVHLLLAS QRLEENKLRG LDSHLSYRIG LRTFSANESR
      661 AVLGITDAYH LPSIPGSGYL KSDADDPLRF NASYVSGAYV APVGSLQSDG TAARGQSPTL
      721 FTAAPVEMPP EPEGDELDGL LGAGLPDLPP PPSAANQGGG EGIPDTLLEV VVRRLTGHGR
      781 PAHEVWLPPL EDSPTVDMLL PEPDWRSSVN QHGQLWMPIG VIDKPYEQRR DVLTINVAGA
      841 AGHIAVVGGP QSGKSTTLRT IIMSAAATHT PEQVQFYCLD FGGGSLAGLA GIPHVGSVAG
      901 RLDSDRVRRT IAELTSLMRR REERFAELGI ESMLDFRRRK AAAVAGESSG DPVAEDNFGD
      961 VFLIIDGWAA MREEFDPLEG QIHAFAQQGL SYGIHLVLSA SRWPEIRPVI KDQIGTRLEL
     1021 RLGDPTDSEM NRRTAALVPM GRPGRGLTPD QLHMLIALPR LDSDSDPATL PEGVNAAKEG
     1081 MDKLWGSRRA PEVRMLPMQI SREDVLAIAA EHGVEQSATR AVVGLGENEL EPWVLDFGVE
     1141 PHFLAFADVE CGKTTLLRNI IAGISESSTP QEAKFIVIDY RRGLLGVVDD ERLGGYSTSS
     1201 QTSGGMIGEL AKYMSRRIPP SDITPQQLRE RSWWTGPEIY VVVDDYDMVA TTSNPLLPLI
     1261 EYLPQARDIG LHVIITRRTG GASRALFDHV VGGMKNLSVD TLIMSGPRDE GKLIGDVRPM
     1321 KLPPGRGILV SRTRGQEMMH IAHLPPL
//