LOCUS QLY31871.1 1347 aa PRT BCT 27-JUL-2020 DEFINITION Nocardia huaxiensis type VII secretion protein EccCa protein. ACCESSION CP059399-1196 PROTEIN_ID QLY31871.1 SOURCE Nocardia huaxiensis ORGANISM Nocardia huaxiensis Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia. REFERENCE 1 (bases 1 to 8339910) AUTHORS Zhuang,K. and Ran,Y. TITLE Direct Submission JOURNAL Submitted (21-JUL-2020) Dermatovenereology, West China Hospital, Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan 610041, China COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: FALCON v. AUGUST-2019 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 250.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/22/2020 23:23:33 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.12 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 7,641 CDSs (total) :: 7,551 Genes (coding) :: 7,450 CDSs (with protein) :: 7,450 Genes (RNA) :: 90 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 3 Pseudo Genes (total) :: 101 CDSs (without protein) :: 101 Pseudo Genes (ambiguous residues) :: 0 of 101 Pseudo Genes (frameshifted) :: 23 of 101 Pseudo Genes (incomplete) :: 76 of 101 Pseudo Genes (internal stop) :: 7 of 101 Pseudo Genes (multiple problems) :: 5 of 101 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Nocardia huaxiensis" /mol_type="genomic DNA" /strain="WCH-YHL-001" /isolation_source="skin sample from patient" /host="Homo sapiens" /type_material="type strain of Nocardia huaxiensis" /db_xref="taxon:2755382" /country="China: Chengdu" /collection_date="2013" /collected_by="Kaiwen Zhuang" protein /gene="eccCa" /locus_tag="H0264_06070" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_011207360.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MVTEGFVRRP RIAPPRAPGG EVALTPPPEI QRPTPTPLLM KLMPVVMLIA VIGMIAMMAM 61 MGRSLLSNPM MMMFPLMMIM SMVGMMMGVR GGGPKSAGEL NEERKDYFRY LAQLRKDVRG 121 TGTKQLETLR WSHPEPVELP SLVGTRRMWE RRPADPDFGH VRVGLGSHRL ATKLARPETG 181 PLEDLEPVST VALRRFVRTH SVVHELPTAV SLKAFPAINI GGELDEARTL VRAMLMELTA 241 FHGPDHVAVA IVCADPDAPA WAWAKWLPHL QHPTARDGMG SARMVYGSLA ELETALSDEL 301 LERGRFMRNP QPTQGRLHLV VVIDDGFVNG SERLVSDSGL DSVTVLDLTA PEYGLAARRG 361 LQLVVTAGEI AARSAAGVEK FATADVIGVT EADAFARKLS RYRIATAAQI VSLGDETRAD 421 PGLMALLKIP DAAQIEPSRV WRPRTARERL RVPIGVTPDG TPVEIDIKES AENGMGPHGL 481 CIGATGSGKS EFLRTLVLSM VTTHSPDALN LVLVDFKGGA TFLGLEGLPH VSAVITNLEE 541 ELALVDRMKD ALSGEMNRRQ ELLRSAGNYA NVTDYEKARA AGVPLDPLPA LFVVVDEFSE 601 LLSQKPDFAD LFVMIGRLGR SLHVHLLLAS QRLEENKLRG LDSHLSYRIG LRTFSANESR 661 AVLGITDAYH LPSIPGSGYL KSDADDPLRF NASYVSGAYV APVGSLQSDG TAARGQSPTL 721 FTAAPVEMPP EPEGDELDGL LGAGLPDLPP PPSAANQGGG EGIPDTLLEV VVRRLTGHGR 781 PAHEVWLPPL EDSPTVDMLL PEPDWRSSVN QHGQLWMPIG VIDKPYEQRR DVLTINVAGA 841 AGHIAVVGGP QSGKSTTLRT IIMSAAATHT PEQVQFYCLD FGGGSLAGLA GIPHVGSVAG 901 RLDSDRVRRT IAELTSLMRR REERFAELGI ESMLDFRRRK AAAVAGESSG DPVAEDNFGD 961 VFLIIDGWAA MREEFDPLEG QIHAFAQQGL SYGIHLVLSA SRWPEIRPVI KDQIGTRLEL 1021 RLGDPTDSEM NRRTAALVPM GRPGRGLTPD QLHMLIALPR LDSDSDPATL PEGVNAAKEG 1081 MDKLWGSRRA PEVRMLPMQI SREDVLAIAA EHGVEQSATR AVVGLGENEL EPWVLDFGVE 1141 PHFLAFADVE CGKTTLLRNI IAGISESSTP QEAKFIVIDY RRGLLGVVDD ERLGGYSTSS 1201 QTSGGMIGEL AKYMSRRIPP SDITPQQLRE RSWWTGPEIY VVVDDYDMVA TTSNPLLPLI 1261 EYLPQARDIG LHVIITRRTG GASRALFDHV VGGMKNLSVD TLIMSGPRDE GKLIGDVRPM 1321 KLPPGRGILV SRTRGQEMMH IAHLPPL //