LOCUS QLY31851.1 8579 aa PRT BCT 27-JUL-2020
DEFINITION Nocardia huaxiensis hypothetical protein protein.
ACCESSION CP059399-1173
PROTEIN_ID QLY31851.1
SOURCE Nocardia huaxiensis
ORGANISM Nocardia huaxiensis
Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae;
Nocardia.
REFERENCE 1 (bases 1 to 8339910)
AUTHORS Zhuang,K. and Ran,Y.
TITLE Direct Submission
JOURNAL Submitted (21-JUL-2020) Dermatovenereology, West China Hospital,
Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan
610041, China
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: FALCON v. AUGUST-2019
Genome Representation :: Full
Expected Final Version :: No
Genome Coverage :: 250.0x
Sequencing Technology :: PacBio Sequel
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/22/2020 23:23:33
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.12
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 7,641
CDSs (total) :: 7,551
Genes (coding) :: 7,450
CDSs (with protein) :: 7,450
Genes (RNA) :: 90
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 75
ncRNAs :: 3
Pseudo Genes (total) :: 101
CDSs (without protein) :: 101
Pseudo Genes (ambiguous residues) :: 0 of 101
Pseudo Genes (frameshifted) :: 23 of 101
Pseudo Genes (incomplete) :: 76 of 101
Pseudo Genes (internal stop) :: 7 of 101
Pseudo Genes (multiple problems) :: 5 of 101
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Nocardia huaxiensis"
/mol_type="genomic DNA"
/strain="WCH-YHL-001"
/isolation_source="skin sample from patient"
/host="Homo sapiens"
/type_material="type strain of Nocardia huaxiensis"
/db_xref="taxon:2755382"
/country="China: Chengdu"
/collection_date="2013"
/collected_by="Kaiwen Zhuang"
protein /locus_tag="H0264_05955"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/transl_table=11
BEGIN
1 MAELPPYLLP LEWVAGSDWP AGEPEGMWGI GGDWRTAASG LREILEDIDA AKSASLKAYP
61 SGEGVAEMTR AFDELRSGDN SLEKLAESFD SIAGAADDVG TEIEYAQLMM ITSLALLLAE
121 IIAAWVFPPT APAVEAVAIG VTRVGIRMLA QRLMNRVVQA VAKLVGERAA GFLVREISID
181 TILGVVQEIA VRKYQGRDVN WETVLVTAVS SAVGAGAASP FGDWLGKKFD DDIIKPWVKG
241 AIIGTGAGLV GAGAGFLASV GTQYLIDGLK TGDWDKAAQN ARNALTNIDP RMFFAGASNG
301 AASGMNRARA DAFYQNRHPE WYRPPTPTPT PTPAPDDDGA RIGFRPPPDP AAPTSPGEPR
361 AGAPGLGPGG TPDGGATQPT GDGSRSGAPQ ANTPVGDGSG ATNPGGTQSG ANQNPGGTQV
421 SGAPHSSGGG QGAGVPQAGG GAQSAVGPHT GGGAQVSGAS QTGGGTQGSA SGGQSGGSQS
481 TSQSGGANQS TGNTQQQSGA AANAARDAGR PQGSPTADTA GDGSTGRPET SSDAGRAGTP
541 DAPRQPPLAD SPAAAPSDTT GTGNTATTDR SGLPAAGPAA TPGIGGPAQA GGLDAGVQAA
601 PGQAALGAST PQLGEQLPLA VSPESLAATP ESPAAVPPGN PAAAAPGAPA SPGDAVRSAD
661 APNSPDAPGT ANGTTPPSTA EIGRTTTDSD STQPNSPASD TSRSALDADS QDSRTSADDR
721 PTDDTASDHP LAPAALADAA RAASGNPARP PADSTPAQIR AGRPGLRPAP AELPPAEPLR
781 PAPRAEAMGD GSATRRPPSE NRAGLTESPQ VGGADLTAGL HTDTGEITSL RLGDNESHAR
841 EGEQSPQTEV ADPQRRPPAA EPGIPESPRG VDNSGLPGRG ALDPAHPGAN HAPDPLQGEP
901 SSAANRTSED EPVQMAGPRV VADPDRADGS RPDAEPGSGS RTRDDSDNAG RHFAADADSA
961 AGRRTDDESD PGGRRVDATE PVDGRREGET SLRPEDSEAA ARRVSDEQNR GECGRLSLLE
1021 IREGTGSRVV RVPEEPVGPA GMSRAELEEA AGARLTRVPR VAAGVPPHDP VGGALLALGE
1081 GAHALVVDEY AGPTDEFGVG AHAYVVRVVR DPVSGELMLE VVDRAAGIRQ GFPPEVPREL
1141 RSVSVVLYDA QGDPVPPRAG AEPGEFPFPR VGTSLDPYPA QVRALLEETE VGRDALALME
1201 RYGVRTRYAD RAPGGQSADY RAHELLATVY TAGSPQLQQA ISVVHEAVHA EFANTGRTVL
1261 AHELPAMSRE SYIDAMVREE AAAHARQYEF ARQLRSAGFD IAVERNETTY FRAYDGDLAG
1321 RVDAGLSPDE ARIHAREAGI RAIVQAVGTA AWGPGADVAN YRDYYGRGYD RFLADSGPHP
1381 DPTLRTITDD SALDTVRDLA NQRRMSWLRA ADLADSTGEL ARALRLPDYD PESLPSAVDA
1441 ALARVERNRT ALAAQLGIDP ADLTRDPLTG PEADRRANLL RREQRLLELS DLLDAHRIEQ
1501 ANATRLADDL TAAAAYDVLD NELFLAGGDG RIVTPRVAVI EGAPPRVYIV DVRGDYDTPL
1561 QRAAELDSGV ITAMADPAVE VHYLNLTVDG AGAVRVTRTP ESVVEANALY GGQAEHLPDP
1621 GVARHRADEA GMQRTEQINR ILDRTELGRR TLELLERNGV RFRFEAGAEP RYEPDARVVV
1681 LDIGVSDVEQ ALAVVHATAH VEDSAQGDSA SNSRDRVKLS RADYIELMLR EEARAHAMEI
1741 ELRKQLRQLD HDLPVDELER AYDEGFHRAR NAAYRADPTD LEVLWDAGFL GGTAQLHAFL
1801 EGAPATDGQR AYAELYGDAW DAAAGLAGKV ETSDPATLPA DGAGPSPARA GDPAAAPPMG
1861 PPSEPPNSPP AAASPDGPDD GDNSGRADSD PNAVWDAMAR NDDHLDALSA RLDALAESLR
1921 SSAGAADRAA QTARFEELLQ QHRADFDEID TRLEAIAAQA RGEAAPEQPD HPAPGNRTAD
1981 DSAPGNGGSG DVSPGDRTDA DAAARREAYD ELVKQREELA REREFQRAKR NDRAERFGIT
2041 DPDTVLGGGN HEGAVLGLYD RAGYDRVETP GGLEQAATVE RRPVSPEELA ARREAIRKLE
2101 LAAERVYELD QQIAEVDRRL TELERAGVEG RRVPSEEVGA QLDRLAGERA QELRRIKPVR
2161 EMRDDLAHRL GIDPARLDVD PDRLEPELRR MYAELDARDA TPEQRAEIDR LADGLADAAR
2221 DVSRAHNRIG RVQDEMARVA GAYQRLAEAV GARMVTSRVA VVDGPNPRVI VFGPRAEAGS
2281 PRADHDAALA EALRESRAAA QAFVRPGADI RMIRVIADRD GGWRAERMDP PQLGRLAAAP
2341 VNGRGLDVVL WRDGAGEWHP VDPTRPDWQP GRAGDAELKR WSPKDPPDGV SGWAMADVVN
2401 DAALPTEDIP AGAVPETVLP VGVPGAKEQN VTGGLPPGTE LFGQHIGDDA YNIVRLILMA
2461 AQAPQHPAVK AWIQRHPAIG EWVRAHPWLR NVPYFGTAFY GYEWTASPGR NVQPMFRLFD
2521 PAEHSPQVDR SHIPEGLHAA FDADYAAWQQ VQDWADGKYE LFLLNDSEVG VIADNVAVHR
2581 LLRQLEQAQA LIGRVRELPD GSNPDELAQA VDRLAEQVAK QFDDPSPDAV RQALRDIHDL
2641 LRTDADPDRL AQTVAQFMDV GYPELTRDQI LQIKNHLMRD EHRVRDFTDP AGAFVRRPMD
2701 RLADVAEAWI RLTAGNPVPQ DILLLRDALA ESDYLRTHPD ATWHDANAHA IGLGLHWDAD
2761 RPPLPGRRAG IPYAVPPLDA RSEWNSPRRD PDDDDWIDIY WFGGGDPGGS PAMPPANPST
2821 GGSPAALDEP STTGGQPNPD RTRSIDGSAQ PPSTAAADSE TPGAQQLRPE PEAERPEAPK
2881 SRLRRLADKL NFWQPDARTG DGESPDPATG ADGNSPEDPA GPGNSASDGE SSRSDRAEVL
2941 ARQREHLLAQ ARQLAGALEV DADGLNGSEL VDAAGAAVAR LAGEEGPGAG LRADWAGRVT
3001 GEIGELVRLA EVAAAAESTL RSGDSIPEAD DGRQWQVVES RRVHEFTYPT AELESARQLL
3061 AAGGDPSDSP VIARDEHPVA ADARARVEEA AVRALLDAQS GTPLGYGLRR VPGVGDRPDS
3121 VVLVGVEPHP DRAMDPVVRS ALAPEGTDFT YLRVIVDGDG VVQVERWRHI APEPPAVADV
3181 TVPPQVSRPE VADLVDFTAP ERALLETAQR LHDQLTESVH EGVRSFGVDP AGRSARELAD
3241 AVRAEYERRL SDIEAAQHDS SGPPAGHRVR LDAEVDVLLH DLALLDAADI TEQRLRAHNF
3301 DAPRFTAPSE WRLSGPDRDF IPADPAVARE LAALGRQVEV FDSLAAHARQ LGIGDVDGRS
3361 VRDLADAIRD RTAPRPDQRA PERRRNARIR ADIDRLTRQY ERSGGDPDRI GLRAHAEAEA
3421 VRAVLAEAGG MHRADGVVRL PDGSGLLAVG SAPHPDSVVP VALRSRVAAL GDEFAYRRVQ
3481 FDSTGRVRIT DMAVRPTGSD HAEDPAPRRS LWQRINERFT TPTSDMPWPP STRITGEWGG
3541 YSHEDLARVL SERHGVRVRR FNAAGVNPDA VRLFAMALDD LLTRYPSANL HVVTINRLFS
3601 DRRGDEPPLA WVAGGGSPFV WRSGTTGFAS TMELDVRHAS DHESALPPRS SGGFHPPSAD
3661 PDAYQTAVHE FGHVLDLTGD GRARRLAMSA LLEHFGATRP HVDRAEFDTW LRQLSGYSFH
3721 EDGRFNPPEA LAEAFHDVES NGVDATEPAR VLYVVLLRAA GIDPAPEILA SLNPAQDSAP
3781 LTNDPARQPI TDGPATPDAP AAAPRAGDDD SPGNFRRFLR GLLPGAPEAN IAPGNGLDGR
3841 SDGSADDGSR ARASTPEAPA RRSMWQRIQD VLNGESSTPP WPPSTLLTDE WADRSHSEIK
3901 RILEERHGIR VRYLGRAGAD PDTVRVFAAT LDEMLTRYPE SHVRTVLIGR LPEFANAAVL
3961 PGGSPFATRP DREGFVTTIV LGLRYAGDID APDTPDSPEP LGFRPRRSSS LIRMSTIHEF
4021 GHTLHATGSN RAFARAYASL VEHYSATRGH IDRAEFDTWL NQLSGYSFNR RGGLRTAEAL
4081 ADAFFDVEEN GVDAAEPAKV LYALLLREAG IEPDPHIMAS LHPNGPPTPG IADLPPAQAD
4141 PIAAPDDAAS RPGADGDGST DHVGESETPD TPRTPEPAPQ PQGEAPRTSD VRARLDAATS
4201 PHAELRANTY AAARSWGVDT DGLDPRQVAR AIHEHRVRVF EELRAGLRDL AGQPESQLRA
4261 ARVQAQERLR AVYEAADALI HDLNVVSAAE RAMQGLRAGQ SDTTVPGERS REDTDSPALD
4321 ERSRRPDAGA QDLGMSVEPD SPVVAERVAA LTRQEEQFLA DARRLAVALA IHPIPESGRE
4381 LGDAVRAVMD GLHARVDAAR TALANPDEPS VELGDAEHQV FTAGRVADEI AELLRAADRA
4441 AQVRAAVESG DPVPARERAR WRRSPERALE SRWDAEALAE AGRRLVAFER MAALVRDAGV
4501 DPANRSAEQL VAALRDADPA TRAEMDRHLA EFTDAGGDPA MVDVRAAAER LALRSMSGGS
4561 GGRTLGFTIT RMGGTTAMAP RMLVVGTQAH PDLALDPAVR DLLAEPGTVV EYHRVRFDED
4621 GIARVESWGW DATDYDDLSP PPDADGDAEQ PGSTRRPTPT SDEPWPPSTE LTGEWADYSH
4681 ADIVRIFAQR HGIRVLRFNA EGVNPDAVRL FAQGLDGLLT RYPGIEVAQM TISALGSVAA
4741 DLRPAAWVMH RTRPFSWTGG APSRSVSLVD LDVEFASRPD AHRPVRPDLA TAEPGFHPPS
4801 RLPTALYTVI HEFAHMLDNA GEKRAAEQAL QTLLDHFGAT RGQVDRAEFE TWLAQLSGYS
4861 FSVGPDGDYS TRGPFNPTEA LAEAFHDVEE NGVYATEPAK VLYALLLREA GFEPDPTIMA
4921 SLAADGSGPD GTARPHVSEE PDDARPDRTD SGNARADDRD SSGGRFRRFL RELLSGGGRP
4981 EIPAGPDPRG ADGVDDGSRA PRSDSPAQPE GSGPLTPAHQ ARLESAERLR RQLADTVHDA
5041 VRVFGLDPAG LRTPELAEAL RTEYDRRTAE FGANARLEAE VGALIGDLAL LDAAETAENR
5101 LRAGDVSESF LDNTHRWQQL GRTHDFTPSD PALARTLATF GDQVAAYDRV VAHARRLGID
5161 DVDGRSVREL AAAVRDRTAP DPGRSGRERR RNIRARNEMH RLTSRFEAAG GDPNRTGLRA
5221 DAEATAIRAV LAEAGGQRLA DNMVRFPADS QGRSRILVVD SAGHPDLVVH PEVRRRVVAM
5281 QDEIGYQRVD FDDRGRIRLL DMTVVRSSDY TPAGDPDRSL WRRISERFTV PTSDLPWPPS
5341 TTMTDEWGQR SHADIVRVLE QRHGIRVLRF NAEGVDPDAV RQAAKALDDL LTRFPRVNLQ
5401 VVDINALQPQ RKGGRKPAAW LADRSSIFVR RPGTAGIGTT MELDVGYYSR RETGLPPSEH
5461 ARADTFHPPT HYPDGYRTVV HEFGHALAST GNHRALSRAL DALLAHYAAT RPEVGRAEFD
5521 VWLRQLSGYS FHEDGRFNPT EAVAEAFTDV EANGVNATEP ARVLYVLLLT EASITPDPAI
5581 LASLETTTVH PESTPRTPPP AQPETRGPEV PVTTSDGSEP GPGAEHPPEG ETPDPPRSAP
5641 EQPKSPPAND GSTARPQPEP ENVQPTQPET DETGSQTPPL ASGGRGAGAP PRPPADGGVD
5701 DPTPSGDNPP SRIDSPQRRH ERLAQAVWHA RMMAEHAAGA RRMADLYAGT DTPHADWTRL
5761 RAERAELLAR LAADHVIRLQ EQADLADSDH TTPDAGSSDE GDAGAALPVA PGGDDSGGGR
5821 GGVTPPVAPG ADDPDGGDGQ ATQPLSGDGV PQTSGEVEPV GRPGQLESTD PETGVVARQQ
5881 DSVAVPVRDV ADPVREVLRF FDEVAQAQRA AAEGGEFQPT VLTESQRAYL RALEAALGLD
5941 GVLADHPDAV RALRELAEIA RVRGFSGAPE SGVEPGAMRY PEDFAALDID EVHGDEEYWR
6001 FQDDPRRVAE AEAEVNRLDV PGPAAMRAGD DQARLTGPEQ VRDALARRLR VDAADLTPER
6061 MGRTMAELRY RNLLRAGAVE ALADAVARHR AATDDVQRAQ IGATRDQWAR ALGIPEAVVE
6121 PGRAPAALAA LRGGILARAR EIADLADAVQ AARQAEAAEP GGTRRLTVEV DGQRLPVRLV
6181 ADADGTWRVE NTDRLRAPEP AESTERLPVP QEDDAPESKL RKFWKWFKDA WQHHDDVPKY
6241 PSGSGIDGQG QTLLIEYYGD VDLGGTFNPA RILKEIATMW KKRGQIRDFL RGYRAGYNDD
6301 FQPPRDRDGR DYEYWLLEAD PELVRQRGEI PEHLLLHWAE LDEARAKARE QAELEAGTTP
6361 DPAQRPGLES DVEAPVPDSE LSDPQGPAAD AINDLADRLR DALSERNRLG DDLYWAANEL
6421 GRPLADLTPG ELHRAHRELQ YRNLRRAGAI EGLADVAQRY LDENAYIPFL RELNHFEQNP
6481 LARFLGDVAR SEGHSTAMLD WEGVNNGGEP GRDWGDLTYS DQPGQDDGTR EWFINALRRE
6541 ELRTERGHWA HMLGVARADL SPHTALGEAL AELRADNTER AADIAEFDAA AIRYSELDAL
6601 VDQLSRQLAE LAIPEHIAAQ GGVMLEPGVA LFDGDPMRLA IVAADLTHES RLADLLAQPN
6661 GIAESLDDGS LTLEFRVVWA DAQGAIHAGR IAVPEVRHIT TEVDGRPVSL TLLRDGDGPW
6721 RVAPNSATDP NDTDRQSDPN TAVQPSPRSP QETATARVDL AEQLEIPLAD LDPVRLHATI
6781 DDLNHANQRR AARLEALADY ARALHAIDDY HRRSPEERAF DPRVPDDDPP IHDDTAPAFL
6841 REIITDPAAF GERLRGPGPE PRPGDPDDRP EPDADWAALL GVNLRNPTPE QLADAYEKFR
6901 DGKIDEYEAL TPEELTRVHA ELRDEIRARA AAIAELESVA RQYNRLAVDA AATHARAEVR
6961 RLLVAQEDLL RARDEAQAAV REAVTGLPVA DAEVAPARID QALDRLRALV APDAETPTRL
7021 AALAAAATRL NEADAAVRQG FSDLAAAMER AALLGQGARP IAENFGVIGD RPPVIVVVGW
7081 GVFPDLAGLT AAEARHPILR DLRAHPGVTV RRVLLDLDEH GRMRMRVEGE DPPPDDLPTD
7141 PDTPQPPATP APDSGPTRPA GPRPVAPVAE PRPDASESAQ PQPITSAHGP REPVQSGSAD
7201 ADATDSVDGL PAAGRSETDA GRSGPGEVAA VDPARAALIR QHAAAIAQRE ALAGMVRELA
7261 RRLRLRVDDA ALSPERVLGT LAEVPTTPLD SAHSALRGDL QDLAQQLVRA AREAGELAEE
7321 LGLVAQYDEL LQQHRDTVRE REFVAAKAND RARRLGLVGA SDEWVRMDPD ARERAITAAF
7381 EAAGSDIVHR PGGLDEASRD TRVPVSDWER AQREAVLRKL IEATERHGDL DGEVRELERR
7441 MRELADAGVV RFRAPLDDVA GELDRLARQR GELLQEIKPR RRTRDELAIR LGVVDDGRPN
7501 EHALGRHLDA TLARLRAQLD ADFWAGRADV AEVRTRTREI DELAEAAADV NRAHLRIGQL
7561 QDEMARVAGV WRGQIRDEGG FMVTPRVGVL PGDPSRIVVF GSRSDADAPR TVYEDALADA
7621 LRNSPIAAQL LVREGATIEF RRVLADREGN WRSEPLPPPA VRRLVSEPFN AVRLNVTMWQ
7681 DADGEWHPVD ATRPSWHVNR PDAGGDRNYG KFKTKPLPDG VSSWGMEDVV DDGLVVFQDI
7741 PPGQMPKSAL PVVRPPGSDE AYGLHHLPPG VELFEQHWGA DSYNIVRLIL MAVQAPSLPM
7801 VVRWIQRHPE IGEWVRARPW LADVPYFGLA FMDYKWFARP ETNVQPMHRP WDPDEHGDRS
7861 GDTEIPESLR AQWEAEREAW QRVQAWADTQ YERFLSDDTD IAQITRELAR YRRDQYADTA
7921 RDLVDLVRER LITGDPGLDR TGDIAAHQEQ LQSRIDHLAK EIADKFPAGH RPEIAEALTQ
7981 IRELLLAGAD PDLIARTLTG YLDLDIPDLT ESQIAQIKNH LMRDTHLVRD YTDPAGGFVH
8041 RPMDRLADVA EAWIRLTTGT PLPEDLILLQ DALAESDYLR RHPDATWNEA NAHAIGLGHH
8101 WDAHRPPLTD WRKGIRYAPT PYTPPTPAST ESNTTPESAP PQPDPTPPGD EADDSRGAPT
8161 GSPTARSSTD AEDAGTPDEP DRGQIPDLSP AGEDPSKSTA PELDPDTDDP AENLSPGALS
8221 PTVTDGTGAP HEPTHQGDTG GPARSSDGEG DDSDGEAGGS ARTPGDDDDD DDGGAAPLND
8281 GRAGGGLPGR AYRSHIPHPP REFELEPMPE RMDVPVYDPG PWPVPDFEEE PAEPGPEQGR
8341 ANPIGTQQQS SGTSSNIDSQ GRTAAASSST GGQASGNGTA APEPSMPAWL RDAAAQMGDP
8401 YQAAQPSERP SQGNSFGAGH QDDGGGSGQP GGVNGSGQQG GTDGSGLEAG ATRLPVRPFN
8461 GVGAAVAFDP ASGVGWGMAG SPEAYAGVYS DTGGGVLVFF RDGERLGVSV NGVSIDVNDP
8521 AVRVEWVPGR DGFTRFSVFL GQVLGGWMVY PNVGAELDLG RLVRDVCADP QRKATVFTR
//