LOCUS       QLY31703.1               578 aa    PRT              BCT 27-JUL-2020
DEFINITION  Nocardia huaxiensis cytochrome c oxidase subunit I protein.
ACCESSION   CP059399-1005
PROTEIN_ID  QLY31703.1
SOURCE      Nocardia huaxiensis
  ORGANISM  Nocardia huaxiensis
            Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae;
            Nocardia.
REFERENCE   1  (bases 1 to 8339910)
  AUTHORS   Zhuang,K. and Ran,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2020) Dermatovenereology, West China Hospital,
            Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan
            610041, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: FALCON v. AUGUST-2019
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/22/2020 23:23:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.12
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 7,641
            CDSs (total)                      :: 7,551
            Genes (coding)                    :: 7,450
            CDSs (with protein)               :: 7,450
            Genes (RNA)                       :: 90
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 23 of 101
            Pseudo Genes (incomplete)         :: 76 of 101
            Pseudo Genes (internal stop)      :: 7 of 101
            Pseudo Genes (multiple problems)  :: 5 of 101
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Nocardia huaxiensis"
                     /mol_type="genomic DNA"
                     /strain="WCH-YHL-001"
                     /isolation_source="skin sample from patient"
                     /host="Homo sapiens"
                     /type_material="type strain of Nocardia huaxiensis"
                     /db_xref="taxon:2755382"
                     /country="China: Chengdu"
                     /collection_date="2013"
                     /collected_by="Kaiwen Zhuang"
     protein         /gene="ctaD"
                     /locus_tag="H0264_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013808424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTAVAPKPEP ELQAQRPYPP RLGPKGSFIY KAVTTTDPKV LGVMYLTTAI SFFMIGGLMA
       61 LLMRGELARP GMQFLSTEQF NQLFTMHGTI MLLFYATAIV FGFANLVLPL QIGAPDVAFP
      121 RLNAFSYWLY LFGATMATAG FITPGGAADF GWTAYTPLSD MVHSPGVGAD LWILGLAVSG
      181 LGTILGGVNM ITTVVCLRCP GMTLFRMPIF TWNIMITSIL VLLAFPILTA ALFALAYDRH
      241 LGGHIYDPSN GGALLYQHLF WYFGHPEVYI IALPFFGIVS EIYPVFSRKP IFGYTTLVYA
      301 TMAIAALSIA VWAHHMYATG AVLLPYFSFM TFLIAVPTGV KFFNWIGTMW RGQLTFETPM
      361 LWSIGFLVTF LFGGLSGVIL ASPPLDFHVS DTYFVVAHFH YVLFGTIVFA TFAGIYFWFP
      421 KMTGRMMDER LGKWHFWATF VGFHTTFLVQ HWLGNEGMPR RYADYLPSDG FTALNTISTI
      481 GAFILGASMI PFVWNVFKSY RYGEVVTVDD PWGYGNSLEW ATSCPPPRHN FYELPRIRSE
      541 RPAFELHYPH MVERMRAEAH VGWGSKSHYV EEENKVHS
//