LOCUS QLY29160.1 561 aa PRT BCT 27-JUL-2020 DEFINITION Nocardia huaxiensis hypothetical protein protein. ACCESSION CP059399-5586 PROTEIN_ID QLY29160.1 SOURCE Nocardia huaxiensis ORGANISM Nocardia huaxiensis Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia. REFERENCE 1 (bases 1 to 8339910) AUTHORS Zhuang,K. and Ran,Y. TITLE Direct Submission JOURNAL Submitted (21-JUL-2020) Dermatovenereology, West China Hospital, Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan 610041, China COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: FALCON v. AUGUST-2019 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 250.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/22/2020 23:23:33 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.12 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 7,641 CDSs (total) :: 7,551 Genes (coding) :: 7,450 CDSs (with protein) :: 7,450 Genes (RNA) :: 90 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 3 Pseudo Genes (total) :: 101 CDSs (without protein) :: 101 Pseudo Genes (ambiguous residues) :: 0 of 101 Pseudo Genes (frameshifted) :: 23 of 101 Pseudo Genes (incomplete) :: 76 of 101 Pseudo Genes (internal stop) :: 7 of 101 Pseudo Genes (multiple problems) :: 5 of 101 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Nocardia huaxiensis" /mol_type="genomic DNA" /strain="WCH-YHL-001" /isolation_source="skin sample from patient" /host="Homo sapiens" /type_material="type strain of Nocardia huaxiensis" /db_xref="taxon:2755382" /country="China: Chengdu" /collection_date="2013" /collected_by="Kaiwen Zhuang" protein /locus_tag="H0264_28250" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /transl_table=11 BEGIN 1 MRQVRTIELI PGRLSARVFA GQAPGGKDVW CYASAGLERV GQREIVLQIA RHRGDTEDAS 61 NTPDFPFWVM RQAHREAEAG KPLDAGARLA VPGSEAGHGI TGFLLEEHPD AAPLYPDSAT 121 PILAVPLVGD EYQVADVYGH ARLLALLGAQ ERLFPYPAYF TRRRKSVVDY ETLRAATVLA 181 RMAMTHTPWI EVAGSGTELR VTVLPERAGW FAWLLREHGP RGITVLTAAT HSTAAHRYIW 241 TRDGAPSAIG VNGIPIAGNS LVAGNFLVLV VTDGQSSTNR MEDGFGLVLS PADRDQISAA 301 LESGREYRHR TGPADLVIGT GSIGHDSPFG AYAAPDTFRR HEPPTAAAAP AHAGPPPEPS 361 SSHPDSAPAK RRGFWSRSDR AAGPQPSLPP PPPLHHPDAP ARFTAHPDSR PYWQGPQPPA 421 HTSGPELGAL PPWLPPAPAP APQPDPAQRY APRAVELKQI VLVSEEAAFA AEMPMDRMAA 481 FCDEITRIVD EGVAAATGHD LEELVVGVEF APERPLQVSL ATKGSFPKPS AQALVNRLDG 541 LNPPPVRERV LAFEVWFRAR G //