LOCUS QLY28651.1 662 aa PRT BCT 27-JUL-2020 DEFINITION Nocardia huaxiensis NAD-dependent DNA ligase LigA protein. ACCESSION CP059399-5009 PROTEIN_ID QLY28651.1 SOURCE Nocardia huaxiensis ORGANISM Nocardia huaxiensis Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia. REFERENCE 1 (bases 1 to 8339910) AUTHORS Zhuang,K. and Ran,Y. TITLE Direct Submission JOURNAL Submitted (21-JUL-2020) Dermatovenereology, West China Hospital, Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan 610041, China COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: FALCON v. AUGUST-2019 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 250.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/22/2020 23:23:33 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.12 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 7,641 CDSs (total) :: 7,551 Genes (coding) :: 7,450 CDSs (with protein) :: 7,450 Genes (RNA) :: 90 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 3 Pseudo Genes (total) :: 101 CDSs (without protein) :: 101 Pseudo Genes (ambiguous residues) :: 0 of 101 Pseudo Genes (frameshifted) :: 23 of 101 Pseudo Genes (incomplete) :: 76 of 101 Pseudo Genes (internal stop) :: 7 of 101 Pseudo Genes (multiple problems) :: 5 of 101 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Nocardia huaxiensis" /mol_type="genomic DNA" /strain="WCH-YHL-001" /isolation_source="skin sample from patient" /host="Homo sapiens" /type_material="type strain of Nocardia huaxiensis" /db_xref="taxon:2755382" /country="China: Chengdu" /collection_date="2013" /collected_by="Kaiwen Zhuang" protein /gene="ligA" /locus_tag="H0264_25350" /EC_number="6.5.1.2" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019927446.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 METGARIQEL ADRIVALREA YYQGEPLVAD ADYDAVEDEL RGLIDAHPEL APDPNPLESV 61 GAPGVLHAPV RHSRPMLSLE KSTTPEQVAA FFDRFPGQSV VVMPKLDGLS LALVFEDGRL 121 ARAVTRGDGT TGDDVTMLVR ALVDGVPARI DLPGRVEVRG EAVMLRSTFA AYNTAHPDKP 181 LINPRNAAAG TLRAKDPATV AERRLQFFGF DLDAPEGAAV DLEEGLAALG IAGAQMRHCE 241 DATQAQAAIS AIEQGRNALD YDLDGAVLRL ADRGAYAAAG TRSNSPRGAL AFKFAAEEKT 301 TLLREVVWDV GKTGKIVPVA WLEPVFVGGT TVTKATLANQ EVIRARDIKV GDTVLVRRAG 361 DVIPFVAGVL DASKRTGEEL EIVPPTVCPS CEQPVTEQGN SRELFCTNVS CPAQTVRRLI 421 HWASRAAADI DAIGQVWIEK LAEAGDLENP SDFYTLTKER LLEFDRVGEV SATRMIESID 481 ASRQVGLRRA LIGLAIPMAS DGTAARLARA GFASLEEVAD AGEERLVEVD DIGPKVAASL 541 AAHLTRLRPE LERLRAAGVS LDVREEDLPP VVAAGAPLEG KTVVITGAIS DPRSGEKVAR 601 PTFQRLCEKA GATAASSVSA NTDMLITGAG VGDSKLTKAE KLGVEVVDQG EIWKLLIDAN 661 VV //