LOCUS       QLY28651.1               662 aa    PRT              BCT 27-JUL-2020
DEFINITION  Nocardia huaxiensis NAD-dependent DNA ligase LigA protein.
ACCESSION   CP059399-5009
PROTEIN_ID  QLY28651.1
SOURCE      Nocardia huaxiensis
  ORGANISM  Nocardia huaxiensis
            Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae;
            Nocardia.
REFERENCE   1  (bases 1 to 8339910)
  AUTHORS   Zhuang,K. and Ran,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2020) Dermatovenereology, West China Hospital,
            Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan
            610041, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: FALCON v. AUGUST-2019
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/22/2020 23:23:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.12
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 7,641
            CDSs (total)                      :: 7,551
            Genes (coding)                    :: 7,450
            CDSs (with protein)               :: 7,450
            Genes (RNA)                       :: 90
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 23 of 101
            Pseudo Genes (incomplete)         :: 76 of 101
            Pseudo Genes (internal stop)      :: 7 of 101
            Pseudo Genes (multiple problems)  :: 5 of 101
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Nocardia huaxiensis"
                     /mol_type="genomic DNA"
                     /strain="WCH-YHL-001"
                     /isolation_source="skin sample from patient"
                     /host="Homo sapiens"
                     /type_material="type strain of Nocardia huaxiensis"
                     /db_xref="taxon:2755382"
                     /country="China: Chengdu"
                     /collection_date="2013"
                     /collected_by="Kaiwen Zhuang"
     protein         /gene="ligA"
                     /locus_tag="H0264_25350"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019927446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 METGARIQEL ADRIVALREA YYQGEPLVAD ADYDAVEDEL RGLIDAHPEL APDPNPLESV
       61 GAPGVLHAPV RHSRPMLSLE KSTTPEQVAA FFDRFPGQSV VVMPKLDGLS LALVFEDGRL
      121 ARAVTRGDGT TGDDVTMLVR ALVDGVPARI DLPGRVEVRG EAVMLRSTFA AYNTAHPDKP
      181 LINPRNAAAG TLRAKDPATV AERRLQFFGF DLDAPEGAAV DLEEGLAALG IAGAQMRHCE
      241 DATQAQAAIS AIEQGRNALD YDLDGAVLRL ADRGAYAAAG TRSNSPRGAL AFKFAAEEKT
      301 TLLREVVWDV GKTGKIVPVA WLEPVFVGGT TVTKATLANQ EVIRARDIKV GDTVLVRRAG
      361 DVIPFVAGVL DASKRTGEEL EIVPPTVCPS CEQPVTEQGN SRELFCTNVS CPAQTVRRLI
      421 HWASRAAADI DAIGQVWIEK LAEAGDLENP SDFYTLTKER LLEFDRVGEV SATRMIESID
      481 ASRQVGLRRA LIGLAIPMAS DGTAARLARA GFASLEEVAD AGEERLVEVD DIGPKVAASL
      541 AAHLTRLRPE LERLRAAGVS LDVREEDLPP VVAAGAPLEG KTVVITGAIS DPRSGEKVAR
      601 PTFQRLCEKA GATAASSVSA NTDMLITGAG VGDSKLTKAE KLGVEVVDQG EIWKLLIDAN
      661 VV
//