LOCUS QLY28224.1 838 aa PRT BCT 27-JUL-2020 DEFINITION Nocardia huaxiensis nitrate- and nitrite sensing domain- containing protein protein. ACCESSION CP059399-4509 PROTEIN_ID QLY28224.1 SOURCE Nocardia huaxiensis ORGANISM Nocardia huaxiensis Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia. REFERENCE 1 (bases 1 to 8339910) AUTHORS Zhuang,K. and Ran,Y. TITLE Direct Submission JOURNAL Submitted (21-JUL-2020) Dermatovenereology, West China Hospital, Sichuan University, Guoxue Xiang, Wuhou District, Chengdu, Sichuan 610041, China COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: FALCON v. AUGUST-2019 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 250.0x Sequencing Technology :: PacBio Sequel ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/22/2020 23:23:33 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.12 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 7,641 CDSs (total) :: 7,551 Genes (coding) :: 7,450 CDSs (with protein) :: 7,450 Genes (RNA) :: 90 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 3 Pseudo Genes (total) :: 101 CDSs (without protein) :: 101 Pseudo Genes (ambiguous residues) :: 0 of 101 Pseudo Genes (frameshifted) :: 23 of 101 Pseudo Genes (incomplete) :: 76 of 101 Pseudo Genes (internal stop) :: 7 of 101 Pseudo Genes (multiple problems) :: 5 of 101 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Nocardia huaxiensis" /mol_type="genomic DNA" /strain="WCH-YHL-001" /isolation_source="skin sample from patient" /host="Homo sapiens" /type_material="type strain of Nocardia huaxiensis" /db_xref="taxon:2755382" /country="China: Chengdu" /collection_date="2013" /collected_by="Kaiwen Zhuang" protein /locus_tag="H0264_22840" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019926249.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MFTARLGVRT RVLAIALVPS LALLVIGVGG AGYLVVEGRN ARDWAVALRD FTPLTKELVG 61 SVQQERQLTL AQLGGEAPNP KGVAQARLRL DAALRAFAPT TATMEDLGPE GVKGDVGGFN 121 TLIAQLAAVR TQVDAHALTL SDTYTFYSHL LDVISIGTQA VQTTAPSAEV AVETGETLTI 181 VGASEMLSRS TSLASILAND GTLPPELAAE FSRLVGGYRV SIEGMATTDE QERVAAAQAI 241 TAMPSWGRLA FMENSFIARA LDPITAVKPK TEPDPLPFTV EEWQAAANEV NTALLELWDS 301 QSQHAQGLAV DAAETDARNS ALAGSALFAV AVLAFLVALV LANRIIRRLK RLRDQTFALA 361 DERLPEIMRK LREGEQVDPQ TETPPLDFGG DEIGQVAQAF SHAHAAAVAA AITESRTREG 421 VKSVFLNIAH RSQVVVHRQL EVLDEAESKQ EDPALLELFF RLDHLATRER RNAENLIILA 481 GGQPGRQWRN PVQLVEVVRS GVGEALDYTR VKIARLPEVS VAGTAVADLV HLIAELVDNA 541 AHFSPPQSQV SVRGNVVGKG VAVEIIDQGM GIPEPEIARI NDMLRNPPDF GVTTLSEDSR 601 LGMFVVAQLA VRNGISVRLT ESDYGGVRAI VLVPSGLTVP AGRTGEIPAV PRQLDATTTG 661 THALAATGAH ALPAAGNSIA LPAARHSAPD EPAPAAPAPP AAHPDHRFPQ QMSFDTPAPF 721 DPPTNPNSWR DRPQPQIPRE NGFRSSEFGG SHYTGSDGRP ALPRRRRQAS LAPELAQEKA 781 TQEAPPEPTR TAEQARDLMS AIANGTRQGR QADPSANAPT SNGIQDRQEG DGDHLKRW //