LOCUS QJW38732.1 528 aa PRT BCT 29-DEC-2022 DEFINITION Cellulosimicrobium protaetiae sigma-70 family RNA polymerase sigma factor protein. ACCESSION CP052758-75 PROTEIN_ID QJW38732.1 SOURCE Cellulosimicrobium protaetiae ORGANISM Cellulosimicrobium protaetiae Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Cellulosimicrobium. REFERENCE 1 (bases 1 to 152586) AUTHORS Le Han,H., Nguyen,T.T.H., Li,Z., Shin,N.R. and Kim,S.G. TITLE Cellulosimicrobium protaetiae sp. nov., isolated from the gut of the larva of Protaetia brevitarsis seulensis JOURNAL Int J Syst Evol Microbiol 72 (3) (2022) PUBMED 35348452 REFERENCE 2 (bases 1 to 152586) AUTHORS Le Ho,H. and Kim,S.-G. TITLE Direct Submission JOURNAL Submitted (06-NOV-2019) Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience & Biotechnology (KRIBB), 181 Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, Republic of Korea REFERENCE 3 (bases 1 to 152586) AUTHORS Ho,H. and Kim,S.-G. TITLE Direct Submission JOURNAL Submitted (17-APR-2020) Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience & Biotechnology (KRIBB), 181 Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, Korea, Republic of COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: JUL-2019 Assembly Method :: HGAP v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 178.0x Sequencing Technology :: PacBio RSII; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/28/2020 06:45:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,140 CDSs (total) :: 4,077 Genes (coding) :: 4,001 CDSs (with protein) :: 4,001 Genes (RNA) :: 63 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 3 Pseudo Genes (total) :: 76 CDSs (without protein) :: 76 Pseudo Genes (ambiguous residues) :: 0 of 76 Pseudo Genes (frameshifted) :: 11 of 76 Pseudo Genes (incomplete) :: 66 of 76 Pseudo Genes (internal stop) :: 2 of 76 Pseudo Genes (multiple problems) :: 3 of 76 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Cellulosimicrobium protaetiae" /mol_type="genomic DNA" /strain="BI34" /isolation_source="intestine from larvae" /host="wax moth" /type_material="type strain of Cellulosimicrobium protaetiae" /db_xref="taxon:2587808" /plasmid="pCPRO01" /country="South Korea: Jeongeup" /collection_date="2019-04" protein /locus_tag="FIC82_020315" /inference="COORDINATES: protein motif:HMM:NF017114.1,HMM:TIGR02937.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSKRLGPAHS EVMPGEDVVV AARGGDGAAL HELVSGYLPL VYNIAGRAMG GHPDVDDVVQ 61 ESMLRAVSHL RELREPARFR SWLVAITVRQ VRTWGALQSS RPEPTSDDVM VQEAAPGPDV 121 QGLAVLDLEL GAQRREAVEA SGWLDAEDRE VLALWWSEAA GQVRRSEWVD AGGFSPASAA 181 VRVKRVKERL NAAREVVRAL AASPRCADLD SLVRHWDGRP ASRWRHRLHR HVRDCDQCEP 241 AVSGMVRLEG LLGNLGMVPV PAALAAQVID STAVRSASAG DASRGNGVDV GGPALSSGQV 301 STAARSGSWY VPGAVAGGVL VVALVALLSL EPEPGLEPVA TTATASASAS SAPPPPERSV 361 APAPEPAEPS STPEATEQPS PDPALGARSL RYAAQPEMFV AAYPGKIGIL VEVRSDSPRV 421 VREVATFELV PGLADSSCYS LRTRGDEYLR HERFRVRLGP DDGSSLFSAD ATFCLRPAGR 481 TGAVTLRSVN YPDHVVRYRD GQLFLDPDEP GETFQESAAF ELVAPLEH //