LOCUS QJW38016.1 1297 aa PRT BCT 29-DEC-2022
DEFINITION Cellulosimicrobium protaetiae HAMP domain-containing protein
protein.
ACCESSION CP052757-3825
PROTEIN_ID QJW38016.1
SOURCE Cellulosimicrobium protaetiae
ORGANISM Cellulosimicrobium protaetiae
Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae;
Cellulosimicrobium.
REFERENCE 1 (bases 1 to 4631595)
AUTHORS Le Han,H., Nguyen,T.T.H., Li,Z., Shin,N.R. and Kim,S.G.
TITLE Cellulosimicrobium protaetiae sp. nov., isolated from the gut of
the larva of Protaetia brevitarsis seulensis
JOURNAL Int J Syst Evol Microbiol 72 (3) (2022)
PUBMED 35348452
REFERENCE 2 (bases 1 to 4631595)
AUTHORS Le Ho,H. and Kim,S.-G.
TITLE Direct Submission
JOURNAL Submitted (06-NOV-2019) Korean Collection for Type Cultures (KCTC),
Korea Research Institute of Bioscience & Biotechnology (KRIBB), 181
Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, Republic of Korea
REFERENCE 3 (bases 1 to 4631595)
AUTHORS Ho,H. and Kim,S.-G.
TITLE Direct Submission
JOURNAL Submitted (17-APR-2020) Korean Collection for Type Cultures (KCTC),
Korea Research Institute of Bioscience & Biotechnology (KRIBB), 181
Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: JUL-2019
Assembly Method :: HGAP v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 178.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 04/28/2020 06:45:21
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.11
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 4,140
CDSs (total) :: 4,077
Genes (coding) :: 4,001
CDSs (with protein) :: 4,001
Genes (RNA) :: 63
rRNAs :: 3, 3, 3 (5S, 16S, 23S)
complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)
tRNAs :: 51
ncRNAs :: 3
Pseudo Genes (total) :: 76
CDSs (without protein) :: 76
Pseudo Genes (ambiguous residues) :: 0 of 76
Pseudo Genes (frameshifted) :: 11 of 76
Pseudo Genes (incomplete) :: 66 of 76
Pseudo Genes (internal stop) :: 2 of 76
Pseudo Genes (multiple problems) :: 3 of 76
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Cellulosimicrobium protaetiae"
/mol_type="genomic DNA"
/strain="BI34"
/isolation_source="intestine from larvae"
/host="wax moth"
/type_material="type strain of Cellulosimicrobium
protaetiae"
/db_xref="taxon:2587808"
/country="South Korea: Jeongeup"
/collection_date="2019-04"
protein /locus_tag="FIC82_019440"
/inference="COORDINATES: protein
motif:HMM:NF012876.1,HMM:NF014567.1,HMM:NF019974.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSVRGKILAA LAVPVLVLFV AAAIISAQAI GSARDASQTS ALVGALAAQD AAGTEIAAER
61 TYSFLDAFAG SEDSEAQMMA QREKTDKALD ARDRAYEKLN TSALDPRVRD AVADTIADRS
121 DLQSVREAID RSSIGQLQRN SRYNTLIDDA LNVPRVLADT TPDRSLAQYL STYVLLDELL
181 SQLALEQPFA GAVLSAAQVG QESTTTSQQA AVLVTTGDTL AERTRTAVRQ LPGDYVLATP
241 TAAYQQVRQN LIGSRPGATP ANLAAQWPDL SQADRDQTTP VRDGIRNDTA EKASDLASAA
301 TTRAVVTILA TLAAVFASIL VAGFIARAIV NPLRRLTDAA EDVRDQLPRL VEQVAVPGQG
361 PGIDLTPITV ESTDEVGQLA TAFNDVNQTT IKVAREQAAL RGSIAEMFVN VARRDQVLLN
421 RQLAFLDDLE RSEEDAGTLS NLFRLDHLAT RMRRNAESLL VLAGIDSGRR VRQPMPASDV
481 IRTASSEIEL YDRVRLNLVV DPLMLGHNAL NAAHLLAELL ENATMFSEPH TPVEVTTGRD
541 EHFVYVTVRD HGLGMTPEEI AEANRKVATH AASDVVGAQR LGLFVVGRLA DRLGAKVRFS
601 TNGDDQGTEV VVSFPGVLFV PDSNVPLPQP TDPLDTSTQA AAQQLAGTGV LPALPAAGAA
661 GPAAPSLPAP AATASFPTVE PEAPVAVPVD LDALTDGTTQ TGMPRRRSRT VDPAAAAPSA
721 SFASGPQTGA IVLPPLATPS LPDQLPAADE AWTPPAEVAA AGSALPSRSR PAAGPVEPVS
781 AEIPVLDVST RSALFSSFRP VGDRPAGENP VELPTAPDVT ATDIPLVAET PTDHVAAQGV
841 WTPQETVEPA ASTWADPASE PEAWSPEPAW APEQPAEQTW NPEPAASSWE PSSVSDAPLD
901 ATRVVPAVPA EPVDESTVAR VPLARRTPVA PEPAAPSAPV APAAPTDVPV VASGPEAGTT
961 AEEIPEELTF EALPRFEELM ADLPTRRSLR ESQARKRGIF GRRPRTTATP QAARPTGPSP
1021 EALASRPAGA PSAPSPSVPA PGAAPLAPTP SALRREPEAP ARASAFAPRA AEQPSSAASP
1081 FAPEAPVAPQ PEAHAPAWAA EHRPVGDVHA VPGAGFAAPE PTYPPVETRP EQVAQPVGHA
1141 AAGSGPEGYG PPSPLVRRQV SDAIEPLEAG YIADSVEARS DWMASAVLYE EMSTLLQGST
1201 DFQEATLADP NDGIYQPLTV DATTTSGLAR RARGEEREGY VDRFTASIDR DPEQLRARLS
1261 AFQSATARGR VEGQDETSST WNPQAMDYVP DSAPQAR
//