LOCUS QJW36170.1 716 aa PRT BCT 29-DEC-2022
DEFINITION Cellulosimicrobium protaetiae transcription termination
factor Rho protein.
ACCESSION CP052757-1608
PROTEIN_ID QJW36170.1
SOURCE Cellulosimicrobium protaetiae
ORGANISM Cellulosimicrobium protaetiae
Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae;
Cellulosimicrobium.
REFERENCE 1 (bases 1 to 4631595)
AUTHORS Le Han,H., Nguyen,T.T.H., Li,Z., Shin,N.R. and Kim,S.G.
TITLE Cellulosimicrobium protaetiae sp. nov., isolated from the gut of
the larva of Protaetia brevitarsis seulensis
JOURNAL Int J Syst Evol Microbiol 72 (3) (2022)
PUBMED 35348452
REFERENCE 2 (bases 1 to 4631595)
AUTHORS Le Ho,H. and Kim,S.-G.
TITLE Direct Submission
JOURNAL Submitted (06-NOV-2019) Korean Collection for Type Cultures (KCTC),
Korea Research Institute of Bioscience & Biotechnology (KRIBB), 181
Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, Republic of Korea
REFERENCE 3 (bases 1 to 4631595)
AUTHORS Ho,H. and Kim,S.-G.
TITLE Direct Submission
JOURNAL Submitted (17-APR-2020) Korean Collection for Type Cultures (KCTC),
Korea Research Institute of Bioscience & Biotechnology (KRIBB), 181
Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, Korea, Republic of
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: JUL-2019
Assembly Method :: HGAP v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 178.0x
Sequencing Technology :: PacBio RSII; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 04/28/2020 06:45:21
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.11
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 4,140
CDSs (total) :: 4,077
Genes (coding) :: 4,001
CDSs (with protein) :: 4,001
Genes (RNA) :: 63
rRNAs :: 3, 3, 3 (5S, 16S, 23S)
complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)
tRNAs :: 51
ncRNAs :: 3
Pseudo Genes (total) :: 76
CDSs (without protein) :: 76
Pseudo Genes (ambiguous residues) :: 0 of 76
Pseudo Genes (frameshifted) :: 11 of 76
Pseudo Genes (incomplete) :: 66 of 76
Pseudo Genes (internal stop) :: 2 of 76
Pseudo Genes (multiple problems) :: 3 of 76
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Cellulosimicrobium protaetiae"
/mol_type="genomic DNA"
/strain="BI34"
/isolation_source="intestine from larvae"
/host="wax moth"
/type_material="type strain of Cellulosimicrobium
protaetiae"
/db_xref="taxon:2587808"
/country="South Korea: Jeongeup"
/collection_date="2019-04"
protein /gene="rho"
/locus_tag="FIC82_008120"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013884494.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTDTIDTATS SATGSAAAGG NARSGALSTL RLPELQALAS QLGVKGTSKM RKGDLVDVIR
61 ARTGEQSASE RPAAPRRDTD GANAAGRETT EAPAASGRGR SRRAERPAAS PVSTTDTTPA
121 TRQDAPSAAS REERTAAPVL DLPVRADEQR AERRDGRRDS RSEAAAAVAE ALGEQGVRTR
181 DTSNESADER AARAAAAVGL VTGERGSRRS GRGAGAPRNG EGDGDASRAD RQRDQSGGER
241 QRDQSGGERQ RDQQGGQQSG QQSGQQSRGE RQGDRRDDRQ LLDDERGGRR RRGRDRGRER
301 DRKRGRNRQG PDLAGLDDIE VNEDDVLLPV AGILDILDNY AFVRTSGYLP GQNDVYVSLG
361 QVKKAGLRRG DAVTGAVRQP REGENQGNTA RQKFNALVRL DTVNGMSPDE ARQRPEFTKL
421 TPLYPQDRLR LENTEATRLT PRVIDIVAPI GKGQRGLIVA PPKAGKTIIM QQIANAITAN
481 NPEVHLMVVL VDERPEEVTD MERTVKGEVI ASTFDRPASD HTIVAELAIE RAKRLVELGQ
541 DVVVLLDSLT RLSRAYNLAA PASGRILSGG VDASALYPPK RFFGAARNIE NGGSLTILAS
601 ALVETGSKMD EVIFEEFKGT GNMELRLSRN LADKRIFPAV DVNASGTRRE EILLSQDELK
661 IVYKLRRVMG ALDQQQAIEL LLGQLKKTQT NVEFLLHVQK TTPGGLADDD NVGRTI
//