LOCUS       QJU60959.1              1015 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 Ti-type conjugative transfer relaxase
            TraA protein.
ACCESSION   CP053347-20
PROTEIN_ID  QJU60959.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 22113)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 22113)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /plasmid="unnamed1"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /gene="traA"
                     /locus_tag="HL653_23910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020817746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAIYHFSAKV ISRANGSSAV ASAAYRAAER LSDERIGRDH DFSNKAGVVH SEVMLPEGAP
       61 AHLADRETLW NAVEAGEKRK DAQLAREVEF SIPREMNQEQ GVALARDFVQ EQFVDRGMIA
      121 DLNVHWDHAE DGSPKPHAHV MLSMREVGPD GFGAKVREWN ATQLLQEWRE AWADHVNERL
      181 SELDIDARID HRTLEAQGID LEPQHKIGPA GMRRLDRGED AERADDHRRI ARENGAKIIA
      241 EPGVALDAIT RMQATFTTRD LAMFAHRHSD GKEQFDQVMG AVRASPELVA LGQDGKGQDR
      301 FTSREMIAIE QRLERAGDSL AATDGHFVAA PHVYRALEAA EGRGLSLSAE QRDALGRITE
      361 RDGLASVVGY AGTGKSAMLG VAREAWEDAG YTVRGAALSG IAAENLEGGS GIASRTIASL
      421 EYQWAQGREQ LGPRDVLVID EAGMIGTRQM ERVLSAADQA GAKVVLVGDP EQLQAIEAGA
      481 AFRSIAEQHG AVEITAIRRQ HEDWQRDATK ALATGRTAEA VQSYEQHGMV QAADTRDGAR
      541 GELVDQWDSQ RIADRDQTRI ILTHTNAEVR DLNLAARDRL RASGELGEDV SVSAERGARD
      601 FADGDRIMFL KNERGLGVKN GSLGTVERVS PTSMAVRLDD GRDVAFDLKD YAHVDHGYAA
      661 TIHKSQGVTV DRAHVLATPG MDRHSAYVAL SRHRDGVQLH YGRDDFDDQR SLVRTLSRER
      721 TKDMAADYGR DPAEGVRAFA DRRGLAGEQW SAKARTGVEI SGAEMPAAGV GGADPAAVDP
      781 SGTSLRAFED QKRGVFRPDV AATTGDTAGR KRSMFDGLKL GGSPTPTPAK ARNLVSDQGL
      841 AGAVERVSRS AVTMMEARAQ GRPVLEHQRI ALEKAQAALD QIRPQASRDL ASVLERNPGL
      901 IRDAAQGASG PAIQAMAHET RVRADPQLRA DRFVENWQGI QRQRGQAEGR GDQAGVDRST
      961 KALERMAKGL ERDPQMESVL RNRRPELGLQ RDMGRELSRD LTQALSRGRE QGLGR
//