LOCUS QJU60780.1 595 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 succinate dehydrogenase flavoprotein subunit protein. ACCESSION CP053346-3554 PROTEIN_ID QJU60780.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_17985" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010218026.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MMSAYQIVDH VYDAVVVGAG GSGLRATMGC AEKGLKTACI TKVFPTRSHT VAAQGGIAAS 61 LGNNTPDHWT WHMYDTVKGS DWLGDQDAIE YMVREAPAAV IELEHAGVPF SRNDNGTIYQ 121 RPFGGHMQNM GAGPPVQRTC AAADRTGHAM LHALYQQSLK YDADFFVEYF ALDLIMENGE 181 CKGVIALCME DGSIHRFRSH AVVLATGGSG RTYFSATSAH TCTGDGGGMV LRAGLPLQDM 241 EFVQFHPTGI YGAGVLITEG ARGEGGYLTN SQGERFMERY APSAKDLASR DVVSRSMAME 301 MREGRGVGKN GDHIFLHLDH IDPKVLAERL PGITETGKIF AGVDLTRQPL PVTPTVHYNM 361 GGVPCNYHGE VVTLRDGNPD AVVPGLFAVG EAACVSVHGA NRLGSNSLID LVVFGRATGF 421 RIAELVQPHA KHGKIVTEAD EKALARLDHY RNASGSTPTA EIRLNMQHTM QKHCAVFRDS 481 ALLGEGQTKI DSIYTTLSDV GIKDRSLIWN TDLIETLELD NMLPQAVVTM HSAENRKESR 541 GAHMHEDFPN RDDANWMKHT ISWFDQGKVT LDYRPVHDYT LTDEVEYIKP KARVY //