LOCUS QJU60400.1 634 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 S9 family peptidase protein. ACCESSION CP053346-392 PROTEIN_ID QJU60400.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_01995" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010219066.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MPLEKAARIF GTRENLYSAA LSPDGKKVVL VGSVGARTRL VYVVDLADSQ PHPILHSDDN 61 LKLTHCGWAG NDRLVCGFRG LDIAYGQRLG FSRLLSLDPD GKNIKDLTAH TVGEALRISQ 121 FTGGIIDWLD GSTPDVLMVR DHVPGFSTGQ RGASTRDGYG VDQVNTRSLS VRTIEGADKL 181 ADTFITDGQG HVRIMSVRGV ANDGMLRGWW DYRYRLAGEE RWRPFSHVVL NAKESLRPLA 241 VDGNANVAYA LKSLNGRDAL YRVRLDETLT SELVYGDPVV DVDDIVTIGR HGRVIGVSYA 301 TDRRVVDYFD PDYKTLAAKL SKALPKLPLV SFESASADES VLLLRASSDT DGGHMFLYQK 361 ASRHLTELMP VRPELDGVAT ATVRSISYPA GDGAMVPAYL TLPPDGADKN LPAIVMPHGG 421 PAARDEWGFD WLAQFFAARG YAVIQPQFRG STGFGDAWYV DNGFKSWKIA VRDVTAAGEW 481 LVKQGIADPA KLAIVGWSYG GYAALQSNVL DPGLFKAVVA IAPVTDLNKV KLEAAGFTNA 541 GIVRAYVGDG PHITEGSPAL HADRFRAPVL MFHGDQDINV GIGQSAGMDA ALKRAGKVSN 601 LVRYPGLDHQ LDDSSARIDM LTKADTFLRD SMGM //