LOCUS QJU60379.1 830 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 ABC transporter permease protein. ACCESSION CP053346-216 PROTEIN_ID QJU60379.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_01100" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008067369.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MAWRLARREL DLRFRGLRLL LVCLFLGVGA LAAIGSLAQS MGRELAARGS TLLGGDVEFA 61 LSQRPANSAE IAAMRKLGQV SATVGMPATA VIGAGPKQQT VPVELKSIDA AYPLYGALTL 121 SDGRNVRAPG PDRVWIAQAL AERIGGRIGQ TIRFGTTDFR VAGVIADEPD RLGEGFTLGP 181 VAIVSTDGMA RTGLIQPGSL YKTKYRIRLS ASADPAAAVT AFRRAFPAGG WDAKTRDKAS 241 PGAARFIERM GQFLLLVGLS ALVIAGIGIA NGVSSYLAAR RSSIAALKTL GATSALITRI 301 YLLQIGAVAL AGIAAGLIVG AVSVPAIVWA AGDILPVTPG FRVEIAPLAL AAAYGMLIAL 361 AFTARPLSEA GSTPAAGLLR GTFGSRPIPR RSWIGVGAAG AAVVALALVT ADQPMLTAWF 421 LAAIAGVLLL LAAFGRGVQA LATRLPRPRR PLARLALAAL HRPGARTSTL VVALGLGLTL 481 FVLLAAIRTS IDANIARTVP ARAPALFALD IPSTREAEFR QTVARVVPTA TIKAIPAMRG 541 SIIGYGGTRV ADLKTIPDEA WALRGERGLT YAETLPEGST ITAGVWWPKD YAGPPLVSMD 601 QRLADALHLK IGDRLDYSLL GVERSARIAS FRRIDWETMG FNYVLVFSPN AIRDAPHNLA 661 ATIDLPPGKE GLVTRALLPG FPSVSVIEVG GVLAQIRTIV AGMAAAITAA ASVAILAGIA 721 VLVGAIAAAR EVRIYDSVIL KTLGATRMQI LIVQLLEYAL LSAILAAVAL VLGLSGAWYV 781 VVRLFDFVWL PDPVAIGLTL LAGIGVTMGL GLAGGWPVLA ARPARALRQL //