LOCUS       QJU60379.1               830 aa    PRT              BCT 18-MAY-2020
DEFINITION  Sphingomonas sp. AP4-R1 ABC transporter permease protein.
ACCESSION   CP053346-216
PROTEIN_ID  QJU60379.1
SOURCE      Sphingomonas sp. AP4-R1
  ORGANISM  Sphingomonas sp. AP4-R1
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Genome sequencing of strain KACC 21605
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5252057)
  AUTHORS   Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
            National Institute of Agricultural Sciences, 166
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2020
            Assembly Method        :: RS HGAP Assembly v. 3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.0x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/11/2020 21:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,729
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 58 of 116
            Pseudo Genes (internal stop)      :: 26 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingomonas sp. AP4-R1"
                     /mol_type="genomic DNA"
                     /strain="AP4-R1"
                     /host="Malus prunifolia (crab apple)"
                     /culture_collection="KACC:21605"
                     /db_xref="taxon:2735134"
                     /country="South Korea: Naju-si"
                     /collection_date="23-Oct-2019"
                     /collected_by="Jun Heo, Soon-Wo Kwon"
                     /identified_by="Jun Heo, Soon-Wo Kwon"
     protein         /locus_tag="HL653_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008067369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAWRLARREL DLRFRGLRLL LVCLFLGVGA LAAIGSLAQS MGRELAARGS TLLGGDVEFA
       61 LSQRPANSAE IAAMRKLGQV SATVGMPATA VIGAGPKQQT VPVELKSIDA AYPLYGALTL
      121 SDGRNVRAPG PDRVWIAQAL AERIGGRIGQ TIRFGTTDFR VAGVIADEPD RLGEGFTLGP
      181 VAIVSTDGMA RTGLIQPGSL YKTKYRIRLS ASADPAAAVT AFRRAFPAGG WDAKTRDKAS
      241 PGAARFIERM GQFLLLVGLS ALVIAGIGIA NGVSSYLAAR RSSIAALKTL GATSALITRI
      301 YLLQIGAVAL AGIAAGLIVG AVSVPAIVWA AGDILPVTPG FRVEIAPLAL AAAYGMLIAL
      361 AFTARPLSEA GSTPAAGLLR GTFGSRPIPR RSWIGVGAAG AAVVALALVT ADQPMLTAWF
      421 LAAIAGVLLL LAAFGRGVQA LATRLPRPRR PLARLALAAL HRPGARTSTL VVALGLGLTL
      481 FVLLAAIRTS IDANIARTVP ARAPALFALD IPSTREAEFR QTVARVVPTA TIKAIPAMRG
      541 SIIGYGGTRV ADLKTIPDEA WALRGERGLT YAETLPEGST ITAGVWWPKD YAGPPLVSMD
      601 QRLADALHLK IGDRLDYSLL GVERSARIAS FRRIDWETMG FNYVLVFSPN AIRDAPHNLA
      661 ATIDLPPGKE GLVTRALLPG FPSVSVIEVG GVLAQIRTIV AGMAAAITAA ASVAILAGIA
      721 VLVGAIAAAR EVRIYDSVIL KTLGATRMQI LIVQLLEYAL LSAILAAVAL VLGLSGAWYV
      781 VVRLFDFVWL PDPVAIGLTL LAGIGVTMGL GLAGGWPVLA ARPARALRQL
//