LOCUS QJU60370.1 744 aa PRT BCT 18-MAY-2020
DEFINITION Sphingomonas sp. AP4-R1 xanthine dehydrogenase family
protein molybdopterin-binding subunit protein.
ACCESSION CP053346-142
PROTEIN_ID QJU60370.1
SOURCE Sphingomonas sp. AP4-R1
ORGANISM Sphingomonas sp. AP4-R1
Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
Sphingomonadaceae; Sphingomonas.
REFERENCE 1 (bases 1 to 5252057)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Genome sequencing of strain KACC 21605
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5252057)
AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W.
TITLE Direct Submission
JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division,
National Institute of Agricultural Sciences, 166
Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
South Korea
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This genome has a base modification file available.
##Genome-Assembly-Data-START##
Assembly Date :: APR-2020
Assembly Method :: RS HGAP Assembly v. 3.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 99.0x
Sequencing Technology :: PacBio RSII
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/11/2020 21:04:38
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.11
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 4,788
CDSs (total) :: 4,729
Genes (coding) :: 4,613
CDSs (with protein) :: 4,613
Genes (RNA) :: 59
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 50
ncRNAs :: 3
Pseudo Genes (total) :: 116
CDSs (without protein) :: 116
Pseudo Genes (ambiguous residues) :: 0 of 116
Pseudo Genes (frameshifted) :: 56 of 116
Pseudo Genes (incomplete) :: 58 of 116
Pseudo Genes (internal stop) :: 26 of 116
Pseudo Genes (multiple problems) :: 22 of 116
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Sphingomonas sp. AP4-R1"
/mol_type="genomic DNA"
/strain="AP4-R1"
/host="Malus prunifolia (crab apple)"
/culture_collection="KACC:21605"
/db_xref="taxon:2735134"
/geo_loc_name="South Korea: Naju-si"
/collection_date="23-Oct-2019"
/collected_by="Jun Heo, Soon-Wo Kwon"
/identified_by="Jun Heo, Soon-Wo Kwon"
protein /locus_tag="HL653_00720"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015459347.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MAPPKPSSPP SSPSRGLTRR RLLVGGGAGV GLALAWGIWP RDYAPNLAAG PGETIVNAFL
61 KIGTDGRVTV IVPQAEMGQG VWTALPQILA DELGADWRQV GVEPAPINPV YANTLLIADA
121 AAEQLPGFLA GPGRWAAREY ATRNALMMTA GSSSIRGFEQ RFREAGAAAR VLLCMAAGKR
181 LGADWQACDT EAGFVVRGDD RFRFGELAAE AAGFSPPDPV PLRDPGEGKL SGQSMPRLDL
241 PAKVDGTMRF AGDVRLPQML FASIRHGPLG DTSVGAIDEK AAHAVPGVVS VVKRQGWVAV
301 LANTTWAADR GADALAAKYQ TRGTLPGAVH VAGALDRALA TGGKRLIAIG DAESALGGTP
361 TVAADYTVPL AAHAAIEPLV ATARMTGGRV EIWVPTQAQG LTRRAVAQAT GYAEDAVTVY
421 PMPVGGGFGR KVENDAAVEA ALLAIEAKRP VQLLWTRGEE MQRARHRPPA KARLKAKLTG
481 GRVAAWSATV ATPSAMGAMG QRLFGHGGGG GPELAAIEGA QPPYAIPAVA VAHAPAEIGI
541 ETGMWRSVAH SYTAFFSESF MDELAAAANS DALSFRMAQL GGNPRLARCL TRVTAAGGWA
601 GEAESGQGLA IHSAFGSHIA LLAEAGVEDD AIRVSRLVAS VDCGRIINPD IVRQQIEGGL
661 VWGLAAALGG AVSYTAGVVD QRSLAALNLP KLADIPDIVV ELVPSKEVPG GVAELAVPVV
721 APAIANAIAS ATGKRLRALP LVLA
//