LOCUS QJU59959.1 373 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 ROK family transcriptional regulator protein. ACCESSION CP053346-4223 PROTEIN_ID QJU59959.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_21395" /inference="COORDINATES: protein motif:HMM:NF012692.1,HMM:NF024212.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRPHPLPSPL STNERQILDL IRRRETIPRA RIANITGLTS ASVTRITQGM EERGLIEETE 61 ATRNGRGQPA KPLRLRAAGG CAIGLNFSHS TVDAVLLDLA GNIRAVIDAP LANTALETIV 121 ETSQSLCHDL LARHPGIGAA MVGVGVSVPG YRSERPDRFA LHPTFSSLLT RNLTEEFRGS 181 LAQPVMVERD AISAAVGESL IGHGRNRTSF GFVHLGHGIG GALVQNGAPI YGAHGNAGGI 241 GDLFPRDRPR PSGSDLIEAL RDAGLDVSDF RDLTAFVPGI CDPLDRWIER AARELRDGLA 301 LFARIFDPHA IILGGRLPLP ICEQLVQRIT DLPQPATYTD NLPQPEIKVS THGPLSGAIG 361 AACLPLYSQF FLL //