LOCUS QJU59495.1 769 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 glycosyltransferase protein. ACCESSION CP053346-3678 PROTEIN_ID QJU59495.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_18605" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007403866.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRDRPAVTIK RIALIGNSPP RLCGISTFTR DVREALVAAE PTLPVDLYAM DDPGSAHAYG 61 PEVVCSIRQE ELADYVQAAR RINESGADVV LVQHEYGIFG GPAGALLLKL LDRVDAPVVV 121 TLHTVLEQPN SEQRAVIEAL ARRAFKLIVM AEKGVQILQA VHGIGGDQVA IVPHGVPDRP 181 FLSTDGLKEA FGFDGHRVLL TFGLLSPNKG IETIIRALPK IVAAHPDVLY VILGATHPHL 241 VAREGEAYRE SLAALAAELG VSQHVRFIDG FLDQERLLDY LQATDMYVTP YLSVTQITSG 301 TLSYAVALGK PVVSTPYWHA EELLADGIGR LVPFGDVDGF STAINDLLDQ PELMERMSRE 361 AYQVGRTMTW DNLARAYLDI CAEAVARRPV RLARATVAPE RALEIHPPKL DAIERMTDGT 421 GMLQHSIFSV PDRDHGYCVD DNCRALMLMH RIDGLAERAD ELARVYASFV QHAWNGDNGR 481 FRNFMSFDRG WLEEEGSEDS FGRSLWTIGV TVSEARNQDL RQWGLHLFDQ VAPFSLALAS 541 PRTWAFALLG ADAVLEAHPD HAVARRLVEE FSDRLWRRLR IGRREGWIWF ESVLAYDNAR 601 LPEALMRGAH RIGNMAMFDE AVEVLAWLDG QQTNALGQFR AVGTDSFWRA YEPPLPFDQQ 661 PLEAWATVDA TLAAHRLTGD AKWLAAARRA YAWYLGENDL DLPMVTLADG GCYDGLMSNR 721 VNLNQGAESI LAFQFACAAM TRATAREDRP SNDVHASLKA VLPKLRAPR //