LOCUS QJU59253.1 775 aa PRT BCT 18-MAY-2020 DEFINITION Sphingomonas sp. AP4-R1 xanthine dehydrogenase family protein molybdopterin-binding subunit protein. ACCESSION CP053346-3377 PROTEIN_ID QJU59253.1 SOURCE Sphingomonas sp. AP4-R1 ORGANISM Sphingomonas sp. AP4-R1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Genome sequencing of strain KACC 21605 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5252057) AUTHORS Heo,J., Kim,S.-J., Kim,J.-S., Hong,S.-B. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (08-MAY-2020) Agricultural Mircrobiology Division, National Institute of Agricultural Sciences, 166 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Date :: APR-2020 Assembly Method :: RS HGAP Assembly v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 99.0x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/11/2020 21:04:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,788 CDSs (total) :: 4,729 Genes (coding) :: 4,613 CDSs (with protein) :: 4,613 Genes (RNA) :: 59 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 3 Pseudo Genes (total) :: 116 CDSs (without protein) :: 116 Pseudo Genes (ambiguous residues) :: 0 of 116 Pseudo Genes (frameshifted) :: 56 of 116 Pseudo Genes (incomplete) :: 58 of 116 Pseudo Genes (internal stop) :: 26 of 116 Pseudo Genes (multiple problems) :: 22 of 116 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingomonas sp. AP4-R1" /mol_type="genomic DNA" /strain="AP4-R1" /host="Malus prunifolia (crab apple)" /culture_collection="KACC:21605" /db_xref="taxon:2735134" /geo_loc_name="South Korea: Naju-si" /collection_date="23-Oct-2019" /collected_by="Jun Heo, Soon-Wo Kwon" /identified_by="Jun Heo, Soon-Wo Kwon" protein /locus_tag="HL653_17095" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004209669.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSIVDSAKEA VQGLVGAVVG KAIQLAPDAF IPGGRPDPLI REQHGHIGRP LSRLDGPLKV 61 RGAAPFAAEF PMDGMLYAAV LFSTIAKGRI AAIDTAEAEG APGVALVMSH RNAPRMAPVP 121 LFMSAPKAAG GIDLPVMQDD RISWNGEPVA LVLAETQEQA DHAKSLIRVD YVEEKPVTDF 181 MAAKAAGTET GLFMGQPLKL EFGDTGKALA EAAHRVDATY TTPRHNHNPI ELHACTVAWD 241 GDALRLHDAT QMVSNTAWSL AQVFGMTESQ VHVTSPFVGG GFGSKGLWWH QVLAAAAARM 301 VQRPVRLTLS REGVYRVVGG RSLTEQRVAI GARNDGGFAA IIHTGTTAMT PHNEFPEPFI 361 LPTMSVYASD TLKLDVETVR LNMLANTFMR APGEAVGTFA LESAIDELAV AMDMDPIELR 421 LKNEPEKDPV TGAPASQRDV ETSYRDGADR FGWSARQAPG TRRDGEWLIG MGTATATYPY 481 HRMPGGAARI TLRSNGVTVE IAAHEMGMGT MTAHTQVVAD RFGLPLDQVD FRYGDSFQPG 541 VVLAGGSQQT ASIGISIIAA QRKLVEKLLQ LAGNDSPLAG LSVDEVGGVN GGLAKLDDPN 601 RHESYASILA RGRRDEVAVV GEAPAPIETQ HWSMHSHGAI FCEVAVNAVT AELRVRRLLG 661 SFDCGRILNP KTAASQFKGG MIMGLGLALM EETQFDERNG RIMNPSLADY HVPVHMDVPE 721 IEVMWTDIPD PHAPMGARGI GEIGITGVGA AVANAIYNAT GKRIRDLPIT LDKLL //